Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NBY entry

There are 6 chains in PDB entry 6NBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 28	LEU 362
B	ASN 11	PRO 493
C	VAL 13	TRP 131
D	SER 2	THR 505
E	MET 1	TRP 101
F	MET 1	ALA 430

There are130 helices in PDB entry 6NBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	59	Right-handed alpha
Helix 2	AA2	A	75	85	Right-handed alpha
Helix 3	AA3	A	96	116	Right-handed alpha
Helix 4	AA4	A	133	153	Right-handed alpha
Helix 5	AA5	A	158	187	Right-handed alpha
Helix 6	AA6	A	192	199	Right-handed alpha
Helix 7	AA7	A	213	226	Right-handed alpha
Helix 8	AA8	A	254	272	Right-handed alpha
Helix 9	AA9	A	300	311	Right-handed alpha
Helix 10	AB1	A	315	330	Right-handed alpha
Helix 11	AB2	A	337	359	Right-handed alpha
Helix 12	AB2	B	16	35	Right-handed alpha
Helix 13	AB3	B	44	62	Right-handed alpha
Helix 14	AB4	B	78	98	Right-handed alpha
Helix 15	AB5	B	101	104	Right-handed alpha
Helix 16	AB6	B	109	128	Right-handed alpha
Helix 17	AB7	B	132	150	Right-handed alpha
Helix 18	AB8	B	158	187	Right-handed alpha
Helix 19	AB9	B	194	200	Right-handed alpha
Helix 20	AC1	B	206	222	Right-handed alpha
Helix 21	AC2	B	230	238	Right-handed alpha
Helix 22	AC3	B	241	265	Right-handed alpha
Helix 23	AC4	B	271	295	Right-handed alpha
Helix 24	AC5	B	299	320	Right-handed alpha
Helix 25	AC6	B	322	353	Right-handed alpha
Helix 26	AC7	B	370	382	Right-handed alpha
Helix 27	AC8	B	391	404	Right-handed alpha
Helix 28	AC9	B	409	430	Right-handed alpha
Helix 29	AD1	B	457	476	Right-handed alpha
Helix 30	AD2	B	479	491	Right-handed alpha
Helix 31	AD3	C	20	43	Right-handed alpha
Helix 32	AD4	C	74	96	Right-handed alpha
Helix 33	AD5	C	103	125	Right-handed alpha
Helix 34	AD6	D	6	21	Right-handed alpha
Helix 35	AD7	D	33	55	Right-handed alpha
Helix 36	AD8	D	89	105	Right-handed alpha
Helix 37	AD9	D	113	132	Right-handed alpha
Helix 38	AE1	D	136	156	Right-handed alpha
Helix 39	AE2	D	162	189	Right-handed alpha
Helix 40	AE3	D	198	203	Right-handed alpha
Helix 41	AE4	D	208	225	Right-handed alpha
Helix 42	AE5	D	233	241	Right-handed alpha
Helix 43	AE6	D	244	252	Right-handed alpha
Helix 44	AE7	D	255	269	Right-handed alpha
Helix 45	AE8	D	271	275	Right-handed alpha
Helix 46	AE9	D	278	298	Right-handed alpha
Helix 47	AF1	D	302	323	Right-handed alpha
Helix 48	AF2	D	326	357	Right-handed alpha
Helix 49	AF3	D	373	386	Right-handed alpha
Helix 50	AF4	D	393	407	Right-handed alpha
Helix 51	AF5	D	413	441	Right-handed alpha
Helix 52	AF6	D	461	479	Right-handed alpha
Helix 53	AF7	D	482	501	Right-handed alpha
Helix 54	AF8	E	3	23	Right-handed alpha
Helix 55	AF9	E	27	51	Right-handed alpha
Helix 56	AG1	E	59	87	Right-handed alpha
Helix 57	AG2	F	10	27	Right-handed alpha
Helix 58	AG3	F	39	62	Right-handed alpha
Helix 59	AG4	F	91	114	Right-handed alpha
Helix 60	AG5	F	121	140	Right-handed alpha
Helix 61	AG6	F	144	162	Right-handed alpha
Helix 62	AG7	F	169	199	Right-handed alpha
Helix 63	AG8	F	205	217	Right-handed alpha
Helix 64	AG9	F	223	241	Right-handed alpha
Helix 65	AH1	F	248	254	Right-handed alpha
Helix 66	AH2	F	258	265	Right-handed alpha
Helix 67	AH3	F	267	279	Right-handed alpha
Helix 68	AH4	F	288	311	Right-handed alpha
Helix 69	AH5	F	315	336	Right-handed alpha
Helix 70	AH6	F	339	366	Right-handed alpha
Helix 71	AH7	F	394	405	Right-handed alpha
Helix 72	AH8	F	416	427	Right-handed alpha
Helix 73	AH9	F	429	453	Right-handed alpha
Helix 74	AI1	F	486	503	Right-handed alpha
Helix 75	AI2	F	506	515	Right-handed alpha
Helix 76	AI3	F	532	555	Right-handed alpha
Helix 77	AI4	F	572	578	Right-handed alpha
Helix 78	AI5	F	582	630	Right-handed alpha
Helix 79	AI6	F	635	654	Right-handed alpha
Helix 80	AI7	G	7	28	Right-handed alpha
Helix 81	AI8	G	33	51	Right-handed alpha
Helix 82	AI9	G	56	81	Right-handed alpha
Helix 83	AJ1	G	99	116	Right-handed alpha
Helix 84	AJ2	G	133	140	Right-handed alpha
Helix 85	AJ3	G	144	165	Right-handed alpha
Helix 86	AJ4	H	51	57	Right-handed alpha
Helix 87	AJ5	H	61	69	Right-handed alpha
Helix 88	AJ6	H	75	90	Right-handed alpha
Helix 89	AJ7	H	96	125	Right-handed alpha
Helix 90	AJ8	H	129	148	Right-handed alpha
Helix 91	AJ9	H	171	195	Right-handed alpha
Helix 92	AK1	H	200	204	Right-handed alpha
Helix 93	AK2	H	212	217	Right-handed alpha
Helix 94	AK3	H	223	228	Right-handed alpha
Helix 95	AK4	H	234	237	Right-handed alpha
Helix 96	AK5	H	258	282	Right-handed alpha
Helix 97	AK6	H	288	297	Right-handed alpha
Helix 98	AK7	H	358	370	Right-handed alpha
Helix 99	AK8	H	375	384	Right-handed alpha
Helix 100	AK9	I	7	33	Right-handed alpha
Helix 101	AL1	I	68	71	Right-handed alpha
Helix 102	AL2	I	108	111	Right-handed alpha
Helix 103	AL3	I	130	134	Right-handed alpha
Helix 104	AL4	I	138	142	Right-handed alpha
Helix 105	AL5	J	14	21	Right-handed alpha
Helix 106	AL6	J	44	56	Right-handed alpha
Helix 107	AL7	J	115	127	Right-handed alpha
Helix 108	AL8	K	27	42	Right-handed alpha
Helix 109	AL9	K	52	61	Right-handed alpha
Helix 110	AM1	K	95	104	Right-handed alpha
Helix 111	AM2	K	115	120	Right-handed alpha
Helix 112	AM3	K	152	168	Right-handed alpha
Helix 113	AM4	K	174	177	Right-handed alpha
Helix 114	AM5	L	16	35	Right-handed alpha
Helix 115	AM6	L	42	51	Right-handed alpha
Helix 116	AM7	L	56	61	Right-handed alpha
Helix 117	AM8	M	43	61	Right-handed alpha
Helix 118	AM9	M	66	86	Right-handed alpha
Helix 119	AN1	N	8	15	Right-handed alpha
Helix 120	AN2	N	30	38	Right-handed alpha
Helix 121	AN3	N	55	60	Right-handed alpha
Helix 122	AN4	N	83	90	Right-handed alpha
Helix 123	AN5	N	110	122	Right-handed alpha
Helix 124	AN6	N	143	148	Right-handed alpha
Helix 125	AN7	O	13	16	Right-handed alpha
Helix 126	AN8	O	20	24	Right-handed alpha
Helix 127	AN9	O	31	34	Right-handed alpha
Helix 128	AO1	O	65	65	Right-handed alpha
Helix 129	AO2	P	6	26	Right-handed alpha
Helix 130	AO3	Q	18	42	Right-handed alpha

There are 19 sheets in PDB entry 6NBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	69	first strand
Strand 2	B	74	76	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	69	first strand
Strand 2	H	5	7	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	71	first strand
Strand 2	D	79	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	73	first strand
Strand 2	F	85	89	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	14	first strand
Strand 2	H	28	32	anti-parallel
Strand 3	H	37	42	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	325	332	first strand
Strand 2	H	337	344	anti-parallel
Strand 3	H	350	356	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	79	85	first strand
Strand 2	I	90	99	anti-parallel
Strand 3	I	135	136	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	31	first strand
Strand 2	J	37	40	anti-parallel
Strand 3	J	93	100	parallel
Strand 4	J	75	82	anti-parallel
Strand 5	J	60	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	106	108	first strand
Strand 2	J	131	133	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	10	first strand
Strand 2	M	107	108	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	83	87	first strand
Strand 2	K	111	114	parallel
Strand 3	K	141	145	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	183	187	first strand
Strand 2	M	28	33	anti-parallel
Strand 3	M	10	13	anti-parallel
Strand 4	M	4	6	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	15	18	first strand
Strand 2	M	21	24	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	39	40	first strand
Strand 2	M	91	92	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	18	19	first strand
Strand 2	N	126	130	parallel
Strand 3	N	98	102	parallel
Strand 4	N	43	45	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	22	first strand
Strand 2	N	139	141	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	63	65	first strand
Strand 2	N	78	80	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	59	62	first strand
Strand 2	O	47	51	anti-parallel
Strand 3	O	38	44	anti-parallel
Strand 4	O	8	11	anti-parallel
Strand 5	O	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	87	90	first strand
Strand 2	S	75	78	anti-parallel
Strand 3	S	63	68	anti-parallel
Strand 4	S	48	53	anti-parallel
Strand 5	S	95	97	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBY