Analysis of interatomic Contacts of Structural Units in PDB entry:
6NCF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NCF entry

There are 2 chains in PDB entry 6NCF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -15	ILE 673
B	SER -15	VAL 553

There are132 helices in PDB entry 6NCF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	118	122	Right-handed 310
Helix 2	AA2	A	124	142	Right-handed alpha
Helix 3	AA3	A	159	163	Right-handed 310
Helix 4	AA4	A	164	168	Right-handed 310
Helix 5	AA5	A	176	188	Right-handed alpha
Helix 6	AA6	A	190	194	Right-handed 310
Helix 7	AA7	A	203	213	Right-handed alpha
Helix 8	AA8	A	216	226	Right-handed alpha
Helix 9	AA9	A	228	239	Right-handed alpha
Helix 10	AB1	A	258	263	Right-handed alpha
Helix 11	AB2	A	271	279	Right-handed alpha
Helix 12	AB3	A	287	290	Right-handed 310
Helix 13	AB4	A	343	365	Right-handed alpha
Helix 14	AB5	A	367	386	Right-handed alpha
Helix 15	AB6	A	390	397	Right-handed alpha
Helix 16	AB7	A	402	414	Right-handed alpha
Helix 17	AB8	A	419	424	Right-handed 310
Helix 18	AB9	A	427	429	Right-handed 310
Helix 19	AC1	A	430	441	Right-handed alpha
Helix 20	AC2	A	444	449	Right-handed alpha
Helix 21	AC3	A	449	457	Right-handed alpha
Helix 22	AC4	A	468	493	Right-handed alpha
Helix 23	AC5	A	495	501	Right-handed alpha
Helix 24	AC6	A	502	515	Right-handed alpha
Helix 25	AC7	A	520	524	Right-handed 310
Helix 26	AC8	A	531	547	Right-handed alpha
Helix 27	AC9	A	547	555	Right-handed alpha
Helix 28	AD1	A	556	561	Right-handed alpha
Helix 29	AD2	A	563	567	Right-handed 310
Helix 30	AD3	A	583	591	Right-handed alpha
Helix 31	AD4	A	593	608	Right-handed alpha
Helix 32	AD5	A	627	653	Right-handed alpha
Helix 33	AD6	A	663	667	Right-handed 310
Helix 34	AD7	B	118	122	Right-handed 310
Helix 35	AD8	B	124	142	Right-handed alpha
Helix 36	AD9	B	159	163	Right-handed 310
Helix 37	AE1	B	164	168	Right-handed 310
Helix 38	AE2	B	176	188	Right-handed alpha
Helix 39	AE3	B	190	194	Right-handed 310
Helix 40	AE4	B	203	212	Right-handed alpha
Helix 41	AE5	B	216	226	Right-handed alpha
Helix 42	AE6	B	228	239	Right-handed alpha
Helix 43	AE7	B	258	263	Right-handed alpha
Helix 44	AE8	B	271	279	Right-handed alpha
Helix 45	AE9	B	287	290	Right-handed 310
Helix 46	AF1	B	343	365	Right-handed alpha
Helix 47	AF2	B	367	386	Right-handed alpha
Helix 48	AF3	B	390	397	Right-handed alpha
Helix 49	AF4	B	398	400	Right-handed 310
Helix 50	AF5	B	402	414	Right-handed alpha
Helix 51	AF6	B	419	424	Right-handed 310
Helix 52	AF7	B	430	441	Right-handed alpha
Helix 53	AF8	B	444	449	Right-handed alpha
Helix 54	AF9	B	449	457	Right-handed alpha
Helix 55	AG1	B	468	493	Right-handed alpha
Helix 56	AG2	B	495	502	Right-handed alpha
Helix 57	AG3	B	502	515	Right-handed alpha
Helix 58	AG4	B	520	524	Right-handed 310
Helix 59	AG5	B	531	547	Right-handed alpha
Helix 60	AG6	B	547	555	Right-handed alpha
Helix 61	AG7	B	556	561	Right-handed alpha
Helix 62	AG8	B	563	567	Right-handed 310
Helix 63	AG9	B	583	591	Right-handed alpha
Helix 64	AH1	B	593	608	Right-handed alpha
Helix 65	AH2	B	627	653	Right-handed alpha
Helix 66	AH3	B	663	667	Right-handed 310
Helix 67	AH4	C	118	122	Right-handed 310
Helix 68	AH5	C	124	142	Right-handed alpha
Helix 69	AH6	C	159	163	Right-handed 310
Helix 70	AH7	C	164	168	Right-handed 310
Helix 71	AH8	C	176	188	Right-handed alpha
Helix 72	AH9	C	190	194	Right-handed 310
Helix 73	AI1	C	203	212	Right-handed alpha
Helix 74	AI2	C	216	226	Right-handed alpha
Helix 75	AI3	C	228	239	Right-handed alpha
Helix 76	AI4	C	258	263	Right-handed alpha
Helix 77	AI5	C	271	279	Right-handed alpha
Helix 78	AI6	C	287	290	Right-handed 310
Helix 79	AI7	C	343	365	Right-handed alpha
Helix 80	AI8	C	367	386	Right-handed alpha
Helix 81	AI9	C	390	397	Right-handed alpha
Helix 82	AJ1	C	398	400	Right-handed 310
Helix 83	AJ2	C	402	414	Right-handed alpha
Helix 84	AJ3	C	420	425	Right-handed alpha
Helix 85	AJ4	C	430	441	Right-handed alpha
Helix 86	AJ5	C	444	449	Right-handed alpha
Helix 87	AJ6	C	449	457	Right-handed alpha
Helix 88	AJ7	C	468	493	Right-handed alpha
Helix 89	AJ8	C	495	501	Right-handed alpha
Helix 90	AJ9	C	502	515	Right-handed alpha
Helix 91	AK1	C	520	524	Right-handed 310
Helix 92	AK2	C	531	547	Right-handed alpha
Helix 93	AK3	C	547	555	Right-handed alpha
Helix 94	AK4	C	556	561	Right-handed alpha
Helix 95	AK5	C	563	567	Right-handed 310
Helix 96	AK6	C	583	591	Right-handed alpha
Helix 97	AK7	C	593	608	Right-handed alpha
Helix 98	AK8	C	627	653	Right-handed alpha
Helix 99	AK9	C	663	667	Right-handed 310
Helix 100	AL1	D	118	122	Right-handed 310
Helix 101	AL2	D	124	142	Right-handed alpha
Helix 102	AL3	D	159	163	Right-handed 310
Helix 103	AL4	D	164	168	Right-handed 310
Helix 104	AL5	D	176	188	Right-handed alpha
Helix 105	AL6	D	190	194	Right-handed 310
Helix 106	AL7	D	203	215	Right-handed alpha
Helix 107	AL8	D	216	226	Right-handed alpha
Helix 108	AL9	D	228	239	Right-handed alpha
Helix 109	AM1	D	258	263	Right-handed alpha
Helix 110	AM2	D	271	279	Right-handed alpha
Helix 111	AM3	D	287	290	Right-handed 310
Helix 112	AM4	D	343	365	Right-handed alpha
Helix 113	AM5	D	367	386	Right-handed alpha
Helix 114	AM6	D	390	397	Right-handed alpha
Helix 115	AM7	D	398	400	Right-handed 310
Helix 116	AM8	D	402	414	Right-handed alpha
Helix 117	AM9	D	420	425	Right-handed alpha
Helix 118	AN1	D	430	441	Right-handed alpha
Helix 119	AN2	D	444	449	Right-handed alpha
Helix 120	AN3	D	449	457	Right-handed alpha
Helix 121	AN4	D	468	493	Right-handed alpha
Helix 122	AN5	D	495	501	Right-handed alpha
Helix 123	AN6	D	502	515	Right-handed alpha
Helix 124	AN7	D	520	524	Right-handed 310
Helix 125	AN8	D	531	547	Right-handed alpha
Helix 126	AN9	D	547	555	Right-handed alpha
Helix 127	AO1	D	556	562	Right-handed alpha
Helix 128	AO2	D	563	567	Right-handed 310
Helix 129	AO3	D	583	591	Right-handed alpha
Helix 130	AO4	D	593	608	Right-handed alpha
Helix 131	AO5	D	627	653	Right-handed alpha
Helix 132	AO6	D	663	667	Right-handed 310

There are 19 sheets in PDB entry 6NCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-14	-12	first strand
Strand 2	A	50	54	parallel
Strand 3	A	7	12	anti-parallel
Strand 4	A	80	88	anti-parallel
Strand 5	A	94	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	23	30	anti-parallel
Strand 3	A	64	72	anti-parallel
Strand 4	A	109	112	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	154	155	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	281	285	anti-parallel
Strand 3	A	309	314	anti-parallel
Strand 4	A	320	326	anti-parallel
Strand 5	A	337	338	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	-14	-12	first strand
Strand 2	B	50	55	parallel
Strand 3	B	6	12	anti-parallel
Strand 4	B	80	88	anti-parallel
Strand 5	B	94	103	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	23	30	anti-parallel
Strand 3	B	38	41	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	23	30	anti-parallel
Strand 3	B	64	72	anti-parallel
Strand 4	B	109	112	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	154	155	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	247	first strand
Strand 2	B	281	285	anti-parallel
Strand 3	B	309	314	anti-parallel
Strand 4	B	320	326	anti-parallel
Strand 5	B	337	338	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	55	first strand
Strand 2	C	6	12	anti-parallel
Strand 3	C	80	88	anti-parallel
Strand 4	C	94	103	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	25	30	anti-parallel
Strand 3	C	38	39	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	25	30	anti-parallel
Strand 3	C	64	70	anti-parallel
Strand 4	C	109	112	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	154	155	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	247	first strand
Strand 2	C	281	285	anti-parallel
Strand 3	C	309	314	anti-parallel
Strand 4	C	320	326	anti-parallel
Strand 5	C	337	338	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	55	first strand
Strand 2	D	6	12	anti-parallel
Strand 3	D	80	88	anti-parallel
Strand 4	D	94	103	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	23	30	anti-parallel
Strand 3	D	38	39	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	23	30	anti-parallel
Strand 3	D	64	72	anti-parallel
Strand 4	D	109	112	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	154	155	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	247	first strand
Strand 2	D	281	285	anti-parallel
Strand 3	D	309	314	anti-parallel
Strand 4	D	320	326	anti-parallel
Strand 5	D	337	338	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NCF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NCF