Analysis of interatomic Contacts of Structural Units in PDB entry:
6NCR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NCR entry

There are 2 chains in PDB entry 6NCR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ALA 343
B
 HIS -1SER 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6NCR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 24Right-handed alpha
Helix 2
AA2
A
24 33Right-handed alpha
Helix 3
AA3
A
45 51Right-handed 310
Helix 4
AA4
A
54 60Right-handed alpha
Helix 5
AA5
A
60 76Right-handed alpha
Helix 6
AA6
A
88 90Right-handed 310
Helix 7
AA7
A
91 104Right-handed alpha
Helix 8
AA8
A
105 111Right-handed alpha
Helix 9
AA9
A
112 125Right-handed alpha
Helix 10
AB1
A
130 135Right-handed alpha
Helix 11
AB2
A
135 147Right-handed alpha
Helix 12
AB3
A
155 157Right-handed 310
Helix 13
AB4
A
158 177Right-handed alpha
Helix 14
AB5
A
215 225Right-handed alpha
Helix 15
AB6
A
244 254Right-handed alpha
Helix 16
AB7
A
256 270Right-handed alpha
Helix 17
AB8
A
273 302Right-handed alpha
Helix 18
AB9
A
303 333Right-handed alpha
Helix 19
AC1
A
335 342Right-handed alpha
Helix 20
AC2
B
17 24Right-handed alpha
Helix 21
AC3
B
24 33Right-handed alpha
Helix 22
AC4
B
45 51Right-handed 310
Helix 23
AC5
B
54 59Right-handed alpha
Helix 24
AC6
B
60 75Right-handed alpha
Helix 25
AC7
B
88 90Right-handed 310
Helix 26
AC8
B
91 104Right-handed alpha
Helix 27
AC9
B
105 111Right-handed alpha
Helix 28
AD1
B
112 125Right-handed alpha
Helix 29
AD2
B
130 135Right-handed alpha
Helix 30
AD3
B
135 147Right-handed alpha
Helix 31
AD4
B
159 177Right-handed alpha
Helix 32
AD5
B
215 225Right-handed alpha
Helix 33
AD6
B
244 254Right-handed alpha
Helix 34
AD7
B
256 270Right-handed alpha
Helix 35
AD8
B
273 302Right-handed alpha
Helix 36
AD9
B
303 333Right-handed alpha
Helix 37
AE1
B
335 345Right-handed alpha
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There are 4 sheets in PDB entry 6NCR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
37 43parallel
Strand 3
A
83 86parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
184 187parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 10first strand
Strand 2
B
37 43parallel
Strand 3
B
82 86parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 153first strand
Strand 2
B
184 186parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il