Analysis of interatomic Contacts of Structural Units in PDB entry:
6NCT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NCT entry

There are 2 chains in PDB entry 6NCT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -26TRP 1057
B
 GLN 329GLU 537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6NCT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 55Right-handed alpha
Helix 2
AA2
A
64 68Right-handed 310
Helix 3
AA3
A
88 92Right-handed 310
Helix 4
AA4
A
108 113Right-handed alpha
Helix 5
AA5
A
114 122Right-handed alpha
Helix 6
AA6
A
124 131Right-handed alpha
Helix 7
AA7
A
133 143Right-handed alpha
Helix 8
AA8
A
143 157Right-handed alpha
Helix 9
AA9
A
159 167Right-handed alpha
Helix 10
AB1
A
178 185Right-handed alpha
Helix 11
AB2
A
216 230Right-handed alpha
Helix 12
AB3
A
235 246Right-handed alpha
Helix 13
AB4
A
266 269Right-handed 310
Helix 14
AB5
A
270 279Right-handed alpha
Helix 15
AB6
A
290 297Right-handed alpha
Helix 16
AB7
A
328 330Right-handed 310
Helix 17
AB8
A
394 396Right-handed 310
Helix 18
AB9
A
488 504Right-handed alpha
Helix 19
AC1
A
529 537Right-handed alpha
Helix 20
AC2
A
544 554Right-handed alpha
Helix 21
AC3
A
554 559Right-handed alpha
Helix 22
AC4
A
560 565Right-handed 310
Helix 23
AC5
A
566 571Right-handed alpha
Helix 24
AC6
A
576 590Right-handed alpha
Helix 25
AC7
A
594 601Right-handed alpha
Helix 26
AC8
A
608 623Right-handed alpha
Helix 27
AC9
A
624 638Right-handed alpha
Helix 28
AD1
A
647 660Right-handed alpha
Helix 29
AD2
A
660 675Right-handed alpha
Helix 30
AD3
A
680 696Right-handed alpha
Helix 31
AD4
A
697 722Right-handed alpha
Helix 32
AD5
A
727 741Right-handed alpha
Helix 33
AD6
A
741 750Right-handed alpha
Helix 34
AD7
A
766 769Right-handed 310
Helix 35
AD8
A
807 827Right-handed alpha
Helix 36
AD9
A
857 864Right-handed alpha
Helix 37
AE1
A
874 885Right-handed alpha
Helix 38
AE2
A
888 912Right-handed alpha
Helix 39
AE3
A
939 943Right-handed 310
Helix 40
AE4
A
957 965Right-handed alpha
Helix 41
AE5
A
974 1004Right-handed alpha
Helix 42
AE6
A
1015 1020Right-handed alpha
Helix 43
AE7
A
1020 1027Right-handed alpha
Helix 44
AE8
A
1031 1048Right-handed alpha
Helix 45
AE9
B
339 347Right-handed alpha
Helix 46
AF1
B
402 408Right-handed alpha
Helix 47
AF2
B
412 416Right-handed 310
Helix 48
AF3
B
417 421Right-handed 310
Helix 49
AF4
B
441 506Right-handed alpha
Helix 50
AF5
B
507 509Right-handed 310
Helix 51
AF6
B
519 584Right-handed alpha
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There are 9 sheets in PDB entry 6NCT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
79 81anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 211first strand
Strand 2
A
190 196anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
260 261anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
484 485parallel
Strand 3
A
435 436anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 392first strand
Strand 2
A
333 338anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
353 361anti-parallel
Strand 3
A
401 409anti-parallel
Strand 4
A
421 428anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 752first strand
Strand 2
A
760 764anti-parallel
Strand 3
A
779 784anti-parallel
Strand 4
A
770 771anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 752first strand
Strand 2
A
760 764anti-parallel
Strand 3
A
779 784anti-parallel
Strand 4
A
796 803anti-parallel
Strand 5
A
845 849anti-parallel
Strand 6
A
838 842anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 357first strand
Strand 2
B
370 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il