Analysis of interatomic Contacts of Structural Units in PDB entry:
6NCW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NCW entry

There are 4 chains in PDB entry 6NCW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 564
B	MET 1	GLU 560
C	MET 1	PHE 559
D	MET 1	PHE 564

There are 40 helices in PDB entry 6NCW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	50	Right-handed 310
Helix 2	AA2	A	289	303	Right-handed alpha
Helix 3	AA3	A	316	327	Right-handed alpha
Helix 4	AA4	A	340	345	Right-handed alpha
Helix 5	AA5	A	348	365	Right-handed alpha
Helix 6	AA6	A	383	401	Right-handed alpha
Helix 7	AA7	A	438	454	Right-handed alpha
Helix 8	AA8	A	483	501	Right-handed alpha
Helix 9	AA9	A	518	527	Right-handed 310
Helix 10	AB1	A	543	554	Right-handed alpha
Helix 11	AB2	B	42	50	Right-handed 310
Helix 12	AB3	B	289	303	Right-handed alpha
Helix 13	AB4	B	316	327	Right-handed alpha
Helix 14	AB5	B	340	345	Right-handed alpha
Helix 15	AB6	B	348	365	Right-handed alpha
Helix 16	AB7	B	383	401	Right-handed alpha
Helix 17	AB8	B	438	454	Right-handed alpha
Helix 18	AB9	B	483	500	Right-handed alpha
Helix 19	AC1	B	518	527	Right-handed 310
Helix 20	AC2	B	543	554	Right-handed alpha
Helix 21	AC3	C	42	50	Right-handed 310
Helix 22	AC4	C	289	303	Right-handed alpha
Helix 23	AC5	C	316	327	Right-handed alpha
Helix 24	AC6	C	340	345	Right-handed alpha
Helix 25	AC7	C	348	365	Right-handed alpha
Helix 26	AC8	C	383	401	Right-handed alpha
Helix 27	AC9	C	438	454	Right-handed alpha
Helix 28	AD1	C	483	501	Right-handed alpha
Helix 29	AD2	C	518	527	Right-handed 310
Helix 30	AD3	C	543	554	Right-handed alpha
Helix 31	AD4	D	42	50	Right-handed 310
Helix 32	AD5	D	289	303	Right-handed alpha
Helix 33	AD6	D	316	327	Right-handed alpha
Helix 34	AD7	D	340	345	Right-handed alpha
Helix 35	AD8	D	348	365	Right-handed alpha
Helix 36	AD9	D	383	401	Right-handed alpha
Helix 37	AE1	D	438	454	Right-handed alpha
Helix 38	AE2	D	483	500	Right-handed alpha
Helix 39	AE3	D	518	527	Right-handed 310
Helix 40	AE4	D	543	554	Right-handed alpha

There are 34 sheets in PDB entry 6NCW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	15	first strand
Strand 2	A	142	147	anti-parallel
Strand 3	A	66	72	anti-parallel
Strand 4	A	98	105	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	19	26	anti-parallel
Strand 3	A	55	63	anti-parallel
Strand 4	A	109	117	anti-parallel
Strand 5	A	78	83	anti-parallel
Strand 6	A	86	92	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	162	first strand
Strand 2	A	165	176	anti-parallel
Strand 3	A	207	211	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	162	first strand
Strand 2	A	165	176	anti-parallel
Strand 3	A	215	216	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	202	first strand
Strand 2	A	182	190	anti-parallel
Strand 3	A	231	238	anti-parallel
Strand 4	A	245	251	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	227	228	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	259	first strand
Strand 2	A	262	265	anti-parallel
Strand 3	A	268	269	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	407	first strand
Strand 2	A	370	374	parallel
Strand 3	A	329	333	parallel
Strand 4	A	307	309	parallel
Strand 5	A	272	276	parallel
Strand 6	A	504	509	parallel
Strand 7	A	461	466	parallel
Strand 8	A	425	428	parallel
Strand 9	A	409	410	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	516	first strand
Strand 2	A	529	530	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	15	first strand
Strand 2	B	142	147	anti-parallel
Strand 3	B	66	72	anti-parallel
Strand 4	B	98	105	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	19	26	anti-parallel
Strand 3	B	55	63	anti-parallel
Strand 4	B	109	117	anti-parallel
Strand 5	B	78	83	anti-parallel
Strand 6	B	86	92	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	162	first strand
Strand 2	B	165	176	anti-parallel
Strand 3	B	207	211	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	162	first strand
Strand 2	B	165	176	anti-parallel
Strand 3	B	215	216	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	202	first strand
Strand 2	B	182	190	anti-parallel
Strand 3	B	231	239	anti-parallel
Strand 4	B	242	251	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	259	first strand
Strand 2	B	262	265	anti-parallel
Strand 3	B	268	269	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	407	first strand
Strand 2	B	370	374	parallel
Strand 3	B	329	333	parallel
Strand 4	B	307	309	parallel
Strand 5	B	272	276	parallel
Strand 6	B	504	509	parallel
Strand 7	B	461	466	parallel
Strand 8	B	425	428	parallel
Strand 9	B	409	410	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	516	first strand
Strand 2	B	529	530	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	15	first strand
Strand 2	C	142	147	anti-parallel
Strand 3	C	66	72	anti-parallel
Strand 4	C	98	105	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	39	first strand
Strand 2	C	19	26	anti-parallel
Strand 3	C	55	63	anti-parallel
Strand 4	C	109	117	anti-parallel
Strand 5	C	78	83	anti-parallel
Strand 6	C	86	92	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	162	first strand
Strand 2	C	165	176	anti-parallel
Strand 3	C	207	211	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	162	first strand
Strand 2	C	165	176	anti-parallel
Strand 3	C	215	216	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	202	first strand
Strand 2	C	182	190	anti-parallel
Strand 3	C	231	239	anti-parallel
Strand 4	C	242	251	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	259	first strand
Strand 2	C	262	265	anti-parallel
Strand 3	C	268	269	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	407	first strand
Strand 2	C	370	374	parallel
Strand 3	C	329	333	parallel
Strand 4	C	307	309	parallel
Strand 5	C	272	276	parallel
Strand 6	C	504	509	parallel
Strand 7	C	461	466	parallel
Strand 8	C	425	428	parallel
Strand 9	C	409	410	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	515	516	first strand
Strand 2	C	529	530	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	15	first strand
Strand 2	D	142	147	anti-parallel
Strand 3	D	66	72	anti-parallel
Strand 4	D	98	105	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	39	first strand
Strand 2	D	19	26	anti-parallel
Strand 3	D	55	63	anti-parallel
Strand 4	D	109	117	anti-parallel
Strand 5	D	78	83	anti-parallel
Strand 6	D	86	92	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	162	first strand
Strand 2	D	165	176	anti-parallel
Strand 3	D	207	211	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	162	first strand
Strand 2	D	165	176	anti-parallel
Strand 3	D	215	216	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	202	first strand
Strand 2	D	182	190	anti-parallel
Strand 3	D	231	238	anti-parallel
Strand 4	D	245	251	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	224	first strand
Strand 2	D	227	228	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	259	first strand
Strand 2	D	262	265	anti-parallel
Strand 3	D	268	269	anti-parallel

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There are 9 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	407	first strand
Strand 2	D	370	374	parallel
Strand 3	D	329	333	parallel
Strand 4	D	307	309	parallel
Strand 5	D	272	276	parallel
Strand 6	D	504	509	parallel
Strand 7	D	461	466	parallel
Strand 8	D	425	428	parallel
Strand 9	D	409	410	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	516	first strand
Strand 2	D	529	530	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NCW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NCW