Analysis of interatomic Contacts of Structural Units in PDB entry:
6NCZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NCZ entry

There are 6 chains in PDB entry 6NCZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 588
B	MET 1	ASN 588
C	MET 1	LEU 589
D	MET 1	LEU 589
E	MET 1	LEU 589
F	MET 1	LEU 589

There are102 helices in PDB entry 6NCZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed alpha
Helix 2	AA2	A	10	14	Right-handed 310
Helix 3	AA3	A	19	23	Right-handed 310
Helix 4	AA4	A	46	52	Right-handed alpha
Helix 5	AA5	A	53	56	Right-handed 310
Helix 6	AA6	A	71	75	Right-handed 310
Helix 7	AA7	A	83	87	Right-handed 310
Helix 8	AA8	A	88	92	Right-handed 310
Helix 9	AA9	A	149	152	Right-handed 310
Helix 10	AB1	A	233	236	Right-handed 310
Helix 11	AB2	A	320	334	Right-handed alpha
Helix 12	AB3	A	348	358	Right-handed alpha
Helix 13	AB4	A	375	394	Right-handed alpha
Helix 14	AB5	A	411	429	Right-handed alpha
Helix 15	AB6	A	449	455	Right-handed 310
Helix 16	AB7	A	472	480	Right-handed alpha
Helix 17	AB8	A	509	525	Right-handed alpha
Helix 18	AB9	A	568	588	Right-handed alpha
Helix 19	AC1	B	2	6	Right-handed alpha
Helix 20	AC2	B	10	14	Right-handed 310
Helix 21	AC3	B	46	52	Right-handed alpha
Helix 22	AC4	B	53	56	Right-handed 310
Helix 23	AC5	B	83	87	Right-handed 310
Helix 24	AC6	B	88	92	Right-handed 310
Helix 25	AC7	B	149	152	Right-handed 310
Helix 26	AC8	B	233	236	Right-handed 310
Helix 27	AC9	B	320	334	Right-handed alpha
Helix 28	AD1	B	347	358	Right-handed alpha
Helix 29	AD2	B	375	393	Right-handed alpha
Helix 30	AD3	B	411	429	Right-handed alpha
Helix 31	AD4	B	449	455	Right-handed 310
Helix 32	AD5	B	472	480	Right-handed alpha
Helix 33	AD6	B	509	525	Right-handed alpha
Helix 34	AD7	B	568	587	Right-handed alpha
Helix 35	AD8	C	2	6	Right-handed alpha
Helix 36	AD9	C	10	14	Right-handed 310
Helix 37	AE1	C	19	23	Right-handed 310
Helix 38	AE2	C	46	52	Right-handed alpha
Helix 39	AE3	C	53	56	Right-handed 310
Helix 40	AE4	C	83	87	Right-handed 310
Helix 41	AE5	C	88	92	Right-handed 310
Helix 42	AE6	C	149	152	Right-handed 310
Helix 43	AE7	C	233	236	Right-handed 310
Helix 44	AE8	C	320	334	Right-handed alpha
Helix 45	AE9	C	347	358	Right-handed alpha
Helix 46	AF1	C	375	394	Right-handed alpha
Helix 47	AF2	C	411	429	Right-handed alpha
Helix 48	AF3	C	449	455	Right-handed 310
Helix 49	AF4	C	472	481	Right-handed alpha
Helix 50	AF5	C	509	525	Right-handed alpha
Helix 51	AF6	C	568	587	Right-handed alpha
Helix 52	AF7	D	2	6	Right-handed alpha
Helix 53	AF8	D	10	14	Right-handed 310
Helix 54	AF9	D	46	52	Right-handed alpha
Helix 55	AG1	D	53	56	Right-handed 310
Helix 56	AG2	D	83	87	Right-handed 310
Helix 57	AG3	D	88	92	Right-handed 310
Helix 58	AG4	D	149	152	Right-handed 310
Helix 59	AG5	D	233	236	Right-handed 310
Helix 60	AG6	D	320	334	Right-handed alpha
Helix 61	AG7	D	348	358	Right-handed alpha
Helix 62	AG8	D	375	393	Right-handed alpha
Helix 63	AG9	D	411	429	Right-handed alpha
Helix 64	AH1	D	449	455	Right-handed 310
Helix 65	AH2	D	472	481	Right-handed alpha
Helix 66	AH3	D	509	525	Right-handed alpha
Helix 67	AH4	D	568	588	Right-handed alpha
Helix 68	AH5	E	2	6	Right-handed alpha
Helix 69	AH6	E	10	14	Right-handed 310
Helix 70	AH7	E	19	23	Right-handed 310
Helix 71	AH8	E	46	52	Right-handed alpha
Helix 72	AH9	E	53	56	Right-handed 310
Helix 73	AI1	E	71	75	Right-handed 310
Helix 74	AI2	E	83	87	Right-handed 310
Helix 75	AI3	E	88	92	Right-handed 310
Helix 76	AI4	E	149	152	Right-handed 310
Helix 77	AI5	E	233	236	Right-handed 310
Helix 78	AI6	E	320	334	Right-handed alpha
Helix 79	AI7	E	347	358	Right-handed alpha
Helix 80	AI8	E	375	394	Right-handed alpha
Helix 81	AI9	E	411	429	Right-handed alpha
Helix 82	AJ1	E	449	455	Right-handed 310
Helix 83	AJ2	E	472	481	Right-handed alpha
Helix 84	AJ3	E	509	525	Right-handed alpha
Helix 85	AJ4	E	568	588	Right-handed alpha
Helix 86	AJ5	F	2	6	Right-handed alpha
Helix 87	AJ6	F	10	14	Right-handed 310
Helix 88	AJ7	F	19	23	Right-handed 310
Helix 89	AJ8	F	46	52	Right-handed alpha
Helix 90	AJ9	F	53	56	Right-handed 310
Helix 91	AK1	F	83	87	Right-handed 310
Helix 92	AK2	F	88	92	Right-handed 310
Helix 93	AK3	F	149	152	Right-handed 310
Helix 94	AK4	F	233	236	Right-handed 310
Helix 95	AK5	F	320	334	Right-handed alpha
Helix 96	AK6	F	347	358	Right-handed alpha
Helix 97	AK7	F	375	394	Right-handed alpha
Helix 98	AK8	F	411	429	Right-handed alpha
Helix 99	AK9	F	449	455	Right-handed 310
Helix 100	AL1	F	472	481	Right-handed alpha
Helix 101	AL2	F	509	525	Right-handed alpha
Helix 102	AL3	F	568	589	Right-handed alpha

There are 51 sheets in PDB entry 6NCZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	188	193	anti-parallel
Strand 3	A	113	118	anti-parallel
Strand 4	A	144	147	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	36	43	anti-parallel
Strand 3	A	97	105	anti-parallel
Strand 4	A	155	163	anti-parallel
Strand 5	A	124	129	anti-parallel
Strand 6	A	132	138	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	183	184	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	205	first strand
Strand 2	A	213	220	anti-parallel
Strand 3	A	247	253	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	243	first strand
Strand 2	A	226	232	anti-parallel
Strand 3	A	267	273	anti-parallel
Strand 4	A	276	282	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	290	first strand
Strand 2	A	293	296	anti-parallel
Strand 3	A	299	300	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	308	first strand
Strand 2	A	338	341	parallel
Strand 3	A	360	364	parallel
Strand 4	A	399	406	parallel
Strand 5	A	433	438	parallel
Strand 6	A	458	461	parallel
Strand 7	A	487	491	parallel
Strand 8	A	530	533	parallel
Strand 9	A	303	308	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	542	first strand
Strand 2	A	554	555	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	188	193	anti-parallel
Strand 3	B	113	118	anti-parallel
Strand 4	B	144	147	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	36	43	anti-parallel
Strand 3	B	97	105	anti-parallel
Strand 4	B	155	163	anti-parallel
Strand 5	B	124	129	anti-parallel
Strand 6	B	132	138	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	183	184	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	205	first strand
Strand 2	B	213	220	anti-parallel
Strand 3	B	247	253	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	243	first strand
Strand 2	B	226	232	anti-parallel
Strand 3	B	267	273	anti-parallel
Strand 4	B	276	282	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	290	first strand
Strand 2	B	293	296	anti-parallel
Strand 3	B	299	300	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	308	first strand
Strand 2	B	338	341	parallel
Strand 3	B	360	364	parallel
Strand 4	B	399	406	parallel
Strand 5	B	433	438	parallel
Strand 6	B	458	461	parallel
Strand 7	B	487	491	parallel
Strand 8	B	530	533	parallel
Strand 9	B	303	308	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	542	first strand
Strand 2	B	554	555	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	188	193	anti-parallel
Strand 3	C	113	118	anti-parallel
Strand 4	C	144	147	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	36	43	anti-parallel
Strand 3	C	97	105	anti-parallel
Strand 4	C	155	163	anti-parallel
Strand 5	C	124	129	anti-parallel
Strand 6	C	132	138	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	122	first strand
Strand 2	C	183	184	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	205	first strand
Strand 2	C	213	220	anti-parallel
Strand 3	C	247	253	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	243	first strand
Strand 2	C	226	232	anti-parallel
Strand 3	C	267	273	anti-parallel
Strand 4	C	276	282	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	290	first strand
Strand 2	C	293	296	anti-parallel
Strand 3	C	299	300	anti-parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	308	first strand
Strand 2	C	338	341	parallel
Strand 3	C	360	364	parallel
Strand 4	C	399	406	parallel
Strand 5	C	433	438	parallel
Strand 6	C	458	461	parallel
Strand 7	C	487	491	parallel
Strand 8	C	530	533	parallel
Strand 9	C	303	308	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	542	first strand
Strand 2	C	554	555	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	188	193	anti-parallel
Strand 3	D	113	118	anti-parallel
Strand 4	D	144	147	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	36	43	anti-parallel
Strand 3	D	97	105	anti-parallel
Strand 4	D	155	163	anti-parallel
Strand 5	D	124	129	anti-parallel
Strand 6	D	132	138	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	122	first strand
Strand 2	D	183	184	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	205	first strand
Strand 2	D	213	220	anti-parallel
Strand 3	D	247	253	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	243	first strand
Strand 2	D	226	232	anti-parallel
Strand 3	D	267	273	anti-parallel
Strand 4	D	276	282	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	290	first strand
Strand 2	D	293	296	anti-parallel
Strand 3	D	299	300	anti-parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	308	first strand
Strand 2	D	338	341	parallel
Strand 3	D	360	364	parallel
Strand 4	D	399	406	parallel
Strand 5	D	433	438	parallel
Strand 6	D	458	461	parallel
Strand 7	D	487	491	parallel
Strand 8	D	530	533	parallel
Strand 9	D	303	308	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	441	first strand
Strand 2	D	446	447	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	541	542	first strand
Strand 2	D	554	555	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	188	193	anti-parallel
Strand 3	E	113	118	anti-parallel
Strand 4	E	144	147	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	80	first strand
Strand 2	E	36	43	anti-parallel
Strand 3	E	97	105	anti-parallel
Strand 4	E	155	163	anti-parallel
Strand 5	E	124	129	anti-parallel
Strand 6	E	132	138	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	122	first strand
Strand 2	E	183	184	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	205	first strand
Strand 2	E	213	220	anti-parallel
Strand 3	E	247	253	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	243	first strand
Strand 2	E	226	232	anti-parallel
Strand 3	E	267	273	anti-parallel
Strand 4	E	276	282	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	287	290	first strand
Strand 2	E	293	296	anti-parallel
Strand 3	E	299	300	anti-parallel

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There are 9 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	308	first strand
Strand 2	E	338	341	parallel
Strand 3	E	360	364	parallel
Strand 4	E	399	406	parallel
Strand 5	E	433	438	parallel
Strand 6	E	458	461	parallel
Strand 7	E	487	491	parallel
Strand 8	E	530	533	parallel
Strand 9	E	303	308	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	440	441	first strand
Strand 2	E	446	447	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	541	542	first strand
Strand 2	E	554	555	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	33	first strand
Strand 2	F	188	193	anti-parallel
Strand 3	F	113	118	anti-parallel
Strand 4	F	144	147	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	80	first strand
Strand 2	F	36	43	anti-parallel
Strand 3	F	97	105	anti-parallel
Strand 4	F	155	163	anti-parallel
Strand 5	F	124	129	anti-parallel
Strand 6	F	132	138	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	122	first strand
Strand 2	F	183	184	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	205	first strand
Strand 2	F	213	220	anti-parallel
Strand 3	F	247	253	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	237	243	first strand
Strand 2	F	226	232	anti-parallel
Strand 3	F	267	273	anti-parallel
Strand 4	F	276	282	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	287	290	first strand
Strand 2	F	293	296	anti-parallel
Strand 3	F	299	300	anti-parallel

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There are 9 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	303	308	first strand
Strand 2	F	338	341	parallel
Strand 3	F	360	364	parallel
Strand 4	F	399	406	parallel
Strand 5	F	433	438	parallel
Strand 6	F	458	461	parallel
Strand 7	F	487	491	parallel
Strand 8	F	530	533	parallel
Strand 9	F	303	308	parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	440	441	first strand
Strand 2	F	446	447	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	541	542	first strand
Strand 2	F	554	555	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NCZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NCZ