Analysis of interatomic Contacts of Structural Units in PDB entry:
6ND0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ND0 entry

There are 4 chains in PDB entry 6ND0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 227	LEU 1110
B	LEU 227	LEU 1110
C	LEU 227	LEU 1110
D	LEU 227	LEU 1110

There are139 helices in PDB entry 6ND0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	229	260	Right-handed alpha
Helix 2	AA2	A	275	286	Right-handed alpha
Helix 3	AA3	A	297	322	Right-handed alpha
Helix 4	AA4	A	322	327	Right-handed alpha
Helix 5	AA5	A	353	364	Right-handed alpha
Helix 6	AA6	A	384	394	Right-handed alpha
Helix 7	AA7	A	409	414	Right-handed alpha
Helix 8	AA8	A	432	438	Right-handed alpha
Helix 9	AA9	A	438	451	Right-handed alpha
Helix 10	AB1	A	467	471	Right-handed 310
Helix 11	AB2	A	476	480	Right-handed 310
Helix 12	AB3	A	489	498	Right-handed alpha
Helix 13	AB4	A	502	507	Right-handed alpha
Helix 14	AB5	A	525	530	Right-handed alpha
Helix 15	AB6	A	542	546	Right-handed 310
Helix 16	AB7	A	549	559	Right-handed alpha
Helix 17	AB8	A	603	609	Right-handed 310
Helix 18	AB9	A	764	771	Right-handed alpha
Helix 19	AC1	A	792	797	Right-handed alpha
Helix 20	AC2	A	798	801	Right-handed 310
Helix 21	AC3	A	805	809	Right-handed 310
Helix 22	AC4	A	817	829	Right-handed alpha
Helix 23	AC5	A	843	850	Right-handed alpha
Helix 24	AC6	A	851	855	Right-handed 310
Helix 25	AC7	A	875	886	Right-handed alpha
Helix 26	AC8	A	943	950	Right-handed 310
Helix 27	AC9	A	964	969	Right-handed alpha
Helix 28	AD1	A	976	979	Right-handed 310
Helix 29	AD2	A	980	988	Right-handed alpha
Helix 30	AD3	A	989	992	Right-handed 310
Helix 31	AD4	A	993	1001	Right-handed alpha
Helix 32	AD5	A	1004	1014	Right-handed alpha
Helix 33	AD6	A	1025	1029	Right-handed 310
Helix 34	AD7	A	1042	1046	Right-handed 310
Helix 35	AD8	A	1053	1065	Right-handed alpha
Helix 36	AD9	B	229	260	Right-handed alpha
Helix 37	AE1	B	275	286	Right-handed alpha
Helix 38	AE2	B	297	322	Right-handed alpha
Helix 39	AE3	B	322	327	Right-handed alpha
Helix 40	AE4	B	353	364	Right-handed alpha
Helix 41	AE5	B	384	394	Right-handed alpha
Helix 42	AE6	B	409	414	Right-handed alpha
Helix 43	AE7	B	432	438	Right-handed alpha
Helix 44	AE8	B	438	451	Right-handed alpha
Helix 45	AE9	B	467	471	Right-handed 310
Helix 46	AF1	B	476	480	Right-handed 310
Helix 47	AF2	B	489	498	Right-handed alpha
Helix 48	AF3	B	502	507	Right-handed alpha
Helix 49	AF4	B	525	530	Right-handed alpha
Helix 50	AF5	B	542	546	Right-handed 310
Helix 51	AF6	B	549	559	Right-handed alpha
Helix 52	AF7	B	603	609	Right-handed 310
Helix 53	AF8	B	764	771	Right-handed alpha
Helix 54	AF9	B	792	797	Right-handed alpha
Helix 55	AG1	B	798	801	Right-handed 310
Helix 56	AG2	B	805	809	Right-handed 310
Helix 57	AG3	B	817	829	Right-handed alpha
Helix 58	AG4	B	843	850	Right-handed alpha
Helix 59	AG5	B	851	855	Right-handed 310
Helix 60	AG6	B	875	886	Right-handed alpha
Helix 61	AG7	B	943	950	Right-handed 310
Helix 62	AG8	B	964	969	Right-handed alpha
Helix 63	AG9	B	976	979	Right-handed 310
Helix 64	AH1	B	980	988	Right-handed alpha
Helix 65	AH2	B	991	1001	Right-handed alpha
Helix 66	AH3	B	1004	1014	Right-handed alpha
Helix 67	AH4	B	1025	1029	Right-handed 310
Helix 68	AH5	B	1042	1046	Right-handed 310
Helix 69	AH6	B	1053	1065	Right-handed alpha
Helix 70	AH7	C	229	252	Right-handed alpha
Helix 71	AH8	C	252	257	Right-handed alpha
Helix 72	AH9	C	273	286	Right-handed alpha
Helix 73	AI1	C	297	316	Right-handed alpha
Helix 74	AI2	C	318	328	Right-handed alpha
Helix 75	AI3	C	352	358	Right-handed alpha
Helix 76	AI4	C	384	394	Right-handed alpha
Helix 77	AI5	C	407	414	Right-handed alpha
Helix 78	AI6	C	432	449	Right-handed alpha
Helix 79	AI7	C	463	466	Right-handed 310
Helix 80	AI8	C	467	472	Right-handed alpha
Helix 81	AI9	C	476	480	Right-handed 310
Helix 82	AJ1	C	485	498	Right-handed alpha
Helix 83	AJ2	C	503	508	Right-handed alpha
Helix 84	AJ3	C	524	529	Right-handed alpha
Helix 85	AJ4	C	542	546	Right-handed 310
Helix 86	AJ5	C	550	560	Right-handed alpha
Helix 87	AJ6	C	603	609	Right-handed 310
Helix 88	AJ7	C	757	762	Right-handed 310
Helix 89	AJ8	C	766	771	Right-handed alpha
Helix 90	AJ9	C	792	797	Right-handed alpha
Helix 91	AK1	C	798	800	Right-handed 310
Helix 92	AK2	C	817	825	Right-handed alpha
Helix 93	AK3	C	826	828	Right-handed 310
Helix 94	AK4	C	843	850	Right-handed alpha
Helix 95	AK5	C	851	855	Right-handed 310
Helix 96	AK6	C	875	886	Right-handed alpha
Helix 97	AK7	C	942	950	Right-handed 310
Helix 98	AK8	C	964	969	Right-handed alpha
Helix 99	AK9	C	976	979	Right-handed 310
Helix 100	AL1	C	980	988	Right-handed alpha
Helix 101	AL2	C	989	996	Right-handed alpha
Helix 102	AL3	C	1004	1013	Right-handed alpha
Helix 103	AL4	C	1045	1050	Right-handed alpha
Helix 104	AL5	C	1053	1065	Right-handed alpha
Helix 105	AL6	D	229	252	Right-handed alpha
Helix 106	AL7	D	252	257	Right-handed alpha
Helix 107	AL8	D	273	286	Right-handed alpha
Helix 108	AL9	D	297	316	Right-handed alpha
Helix 109	AM1	D	318	328	Right-handed alpha
Helix 110	AM2	D	352	358	Right-handed alpha
Helix 111	AM3	D	384	394	Right-handed alpha
Helix 112	AM4	D	407	414	Right-handed alpha
Helix 113	AM5	D	432	449	Right-handed alpha
Helix 114	AM6	D	463	466	Right-handed 310
Helix 115	AM7	D	467	472	Right-handed alpha
Helix 116	AM8	D	476	480	Right-handed 310
Helix 117	AM9	D	485	498	Right-handed alpha
Helix 118	AN1	D	503	508	Right-handed alpha
Helix 119	AN2	D	524	529	Right-handed alpha
Helix 120	AN3	D	542	546	Right-handed 310
Helix 121	AN4	D	550	560	Right-handed alpha
Helix 122	AN5	D	603	609	Right-handed 310
Helix 123	AN6	D	757	762	Right-handed 310
Helix 124	AN7	D	766	771	Right-handed alpha
Helix 125	AN8	D	792	797	Right-handed alpha
Helix 126	AN9	D	798	800	Right-handed 310
Helix 127	AO1	D	817	825	Right-handed alpha
Helix 128	AO2	D	826	828	Right-handed 310
Helix 129	AO3	D	843	850	Right-handed alpha
Helix 130	AO4	D	851	855	Right-handed 310
Helix 131	AO5	D	875	886	Right-handed alpha
Helix 132	AO6	D	942	950	Right-handed 310
Helix 133	AO7	D	964	969	Right-handed alpha
Helix 134	AO8	D	976	979	Right-handed 310
Helix 135	AO9	D	980	988	Right-handed alpha
Helix 136	AP1	D	989	996	Right-handed alpha
Helix 137	AP2	D	1004	1013	Right-handed alpha
Helix 138	AP3	D	1045	1050	Right-handed alpha
Helix 139	AP4	D	1053	1065	Right-handed alpha

There are 18 sheets in PDB entry 6ND0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	373	378	parallel
Strand 3	A	343	348	parallel
Strand 4	A	421	424	parallel
Strand 5	A	455	460	parallel
Strand 6	A	482	485	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	540	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	564	570	anti-parallel
Strand 4	A	578	581	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	744	745	first strand
Strand 2	A	1019	1020	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	834	838	first strand
Strand 2	A	812	816	parallel
Strand 3	A	777	782	parallel
Strand 4	A	857	862	parallel
Strand 5	A	936	940	parallel
Strand 6	A	972	974	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1036	1039	first strand
Strand 2	A	1106	1109	anti-parallel
Strand 3	A	1071	1075	anti-parallel
Strand 4	A	1089	1093	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	399	first strand
Strand 2	B	373	378	parallel
Strand 3	B	343	348	parallel
Strand 4	B	421	424	parallel
Strand 5	B	455	460	parallel
Strand 6	B	482	485	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	540	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	564	570	anti-parallel
Strand 4	B	578	581	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	744	745	first strand
Strand 2	B	1019	1020	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	834	838	first strand
Strand 2	B	812	816	parallel
Strand 3	B	777	782	parallel
Strand 4	B	857	862	parallel
Strand 5	B	936	940	parallel
Strand 6	B	972	974	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1036	1039	first strand
Strand 2	B	1106	1109	anti-parallel
Strand 3	B	1071	1075	anti-parallel
Strand 4	B	1089	1093	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	401	first strand
Strand 2	C	373	378	parallel
Strand 3	C	343	349	parallel
Strand 4	C	421	425	parallel
Strand 5	C	455	458	parallel
Strand 6	C	482	483	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	540	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	564	569	anti-parallel
Strand 4	C	579	581	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	834	838	first strand
Strand 2	C	812	816	parallel
Strand 3	C	777	782	parallel
Strand 4	C	857	862	parallel
Strand 5	C	936	940	parallel
Strand 6	C	972	974	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1036	1039	first strand
Strand 2	C	1106	1109	anti-parallel
Strand 3	C	1071	1075	anti-parallel
Strand 4	C	1089	1093	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	401	first strand
Strand 2	D	373	378	parallel
Strand 3	D	343	349	parallel
Strand 4	D	421	425	parallel
Strand 5	D	455	458	parallel
Strand 6	D	482	483	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	540	first strand
Strand 2	D	594	599	anti-parallel
Strand 3	D	564	569	anti-parallel
Strand 4	D	579	581	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	834	838	first strand
Strand 2	D	812	816	parallel
Strand 3	D	777	782	parallel
Strand 4	D	857	862	parallel
Strand 5	D	936	940	parallel
Strand 6	D	972	974	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1036	1039	first strand
Strand 2	D	1106	1109	anti-parallel
Strand 3	D	1071	1075	anti-parallel
Strand 4	D	1089	1093	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ND0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ND0