Analysis of interatomic Contacts of Structural Units in PDB entry:
6ND1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ND1 entry

There are 6 chains in PDB entry 6ND1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 19GLU 465
A
 GLU 6PRO 614
C
 PRO 25VAL 80
D
 ASN 36VAL 77
E
 SER 29LEU 176
F
 GLN 101GLY 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6ND1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
28 48Right-handed alpha
Helix 2
AA2
B
65 71Right-handed alpha
Helix 3
AA3
B
82 93Right-handed alpha
Helix 4
AA4
B
116 137Right-handed alpha
Helix 5
AA5
B
146 174Right-handed alpha
Helix 6
AA6
B
179 197Right-handed alpha
Helix 7
AA7
B
215 223Right-handed alpha
Helix 8
AA8
B
229 238Right-handed alpha
Helix 9
AA9
B
243 262Right-handed alpha
Helix 10
AB1
B
286 289Right-handed 310
Helix 11
AB2
B
290 314Right-handed alpha
Helix 12
AB3
B
358 384Right-handed alpha
Helix 13
AB4
B
387 399Right-handed alpha
Helix 14
AB5
B
409 440Right-handed alpha
Helix 15
AB6
B
444 464Right-handed alpha
Helix 16
AB7
A
15 21Right-handed alpha
Helix 17
AB8
A
30 36Right-handed alpha
Helix 18
AB9
A
59 64Right-handed alpha
Helix 19
AC1
A
68 78Right-handed alpha
Helix 20
AC2
A
88 110Right-handed alpha
Helix 21
AC3
A
221 232Right-handed alpha
Helix 22
AC4
A
233 246Right-handed alpha
Helix 23
AC5
A
255 268Right-handed alpha
Helix 24
AC6
A
276 286Right-handed alpha
Helix 25
AC7
A
298 311Right-handed alpha
Helix 26
AC8
A
318 328Right-handed alpha
Helix 27
AC9
A
328 341Right-handed alpha
Helix 28
AD1
A
346 360Right-handed alpha
Helix 29
AD2
A
368 373Right-handed alpha
Helix 30
AD3
A
378 386Right-handed alpha
Helix 31
AD4
A
391 397Right-handed alpha
Helix 32
AD5
A
399 407Right-handed alpha
Helix 33
AD6
A
411 424Right-handed alpha
Helix 34
AD7
A
480 484Right-handed 310
Helix 35
AD8
A
486 494Right-handed 310
Helix 36
AD9
A
537 541Right-handed 310
Helix 37
AE1
C
26 36Right-handed alpha
Helix 38
AE2
C
43 80Right-handed alpha
Helix 39
AE3
D
38 47Right-handed alpha
Helix 40
AE4
D
55 75Right-handed alpha
Helix 41
AE5
E
30 60Right-handed alpha
Helix 42
AE6
E
70 81Right-handed alpha
Helix 43
AE7
E
92 124Right-handed alpha
Helix 44
AE8
E
127 153Right-handed alpha
Helix 45
AE9
E
159 176Right-handed alpha
Helix 46
AF1
F
102 120Right-handed alpha
Helix 47
AF2
F
122 136Right-handed alpha
Helix 48
AF3
F
139 152Right-handed alpha
Helix 49
AF4
F
156 170Right-handed alpha
Helix 50
AF5
F
175 192Right-handed alpha
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There are 5 sheets in PDB entry 6ND1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 203first strand
Strand 2
B
210 213anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 269first strand
Strand 2
B
279 284anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 436first strand
Strand 2
A
450 455anti-parallel
Strand 3
A
569 574anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 525first strand
Strand 2
A
513 519anti-parallel
Strand 3
A
530 532anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 525first strand
Strand 2
A
513 519anti-parallel
Strand 3
A
585 594anti-parallel
Strand 4
A
602 609anti-parallel
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