Analysis of interatomic Contacts of Structural Units in PDB entry:
6ND4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ND4 entry

There are 30 chains in PDB entry 6ND4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
0
 G 15 N 606
1
 N 1 U 15
2
 A 23 U 333
H
 GLN 9THR 896
I
 UNK 27ILE 723
J
 SER 2THR 512
K
 UNK 391ASP 515
L
 SER 3LEU 557
M
 SER 2ARG 432
N
 GLU 29PHE 776
O
 LYS 2MET 856
P
 SER 2UNK 431
Q
 TYR 5VAL 921
R
 UNK 7PHE 817
S
 PRO 13TYR 594
T
 LYS 19ALA 939
U
 MET 1LYS 438
W
 ASP 64SER 448
Z
 VAL 2LEU 170
A
 ALA 425HIS 455
D
 LEU 190GLY 214
a
 PRO 3TYR 415
b
 UNK 1ALA 437
c
 GLU 115LYS 326
d
 LYS 85GLY 324
e
 ASN 5LEU 125
f
 ASN 5LEU 125
g
 GLN 129GLN 570
l
 THR 7ASN 31
x
 UNK 0UNK 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are250 helices in PDB entry 6ND4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
71 78Right-handed alpha
Helix 2
AA2
H
253 257Right-handed 310
Helix 3
AA3
H
417 427Right-handed alpha
Helix 4
AA4
H
477 481Right-handed 310
Helix 5
AA5
H
564 569Right-handed alpha
Helix 6
AA6
H
819 831Right-handed alpha
Helix 7
AA7
H
849 860Right-handed alpha
Helix 8
AA8
H
874 879Right-handed 310
Helix 9
AA9
H
883 896Right-handed alpha
Helix 10
AB1
I
458 467Right-handed alpha
Helix 11
AB2
I
476 486Right-handed alpha
Helix 12
AB3
I
497 503Right-handed alpha
Helix 13
AB4
I
509 516Right-handed alpha
Helix 14
AB5
I
525 530Right-handed alpha
Helix 15
AB6
I
541 545Right-handed 310
Helix 16
AB7
I
549 558Right-handed alpha
Helix 17
AB8
I
562 571Right-handed alpha
Helix 18
AB9
I
578 590Right-handed alpha
Helix 19
AC1
I
593 599Right-handed alpha
Helix 20
AC2
I
603 617Right-handed alpha
Helix 21
AC3
I
632 646Right-handed alpha
Helix 22
AC4
I
651 678Right-handed alpha
Helix 23
AC5
J
21 28Right-handed alpha
Helix 24
AC6
J
285 289Right-handed 310
Helix 25
AC7
J
354 361Right-handed alpha
Helix 26
AC8
J
362 366Right-handed 310
Helix 27
AC9
J
386 394Right-handed alpha
Helix 28
AD1
J
396 403Right-handed alpha
Helix 29
AD2
J
410 424Right-handed alpha
Helix 30
AD3
J
428 432Right-handed 310
Helix 31
AD4
J
435 450Right-handed alpha
Helix 32
AD5
J
455 475Right-handed alpha
Helix 33
AD6
J
477 512Right-handed alpha
Helix 34
AD7
K
392 401Right-handed alpha
Helix 35
AD8
K
405 412Right-handed alpha
Helix 36
AD9
K
416 426Right-handed alpha
Helix 37
AE1
K
429 444Right-handed alpha
Helix 38
AE2
K
450 463Right-handed alpha
Helix 39
AE3
K
474 515Right-handed alpha
Helix 40
AE4
L
12 14Right-handed 310
Helix 41
AE5
L
437 445Right-handed alpha
Helix 42
AE6
L
450 457Right-handed alpha
Helix 43
AE7
L
461 471Right-handed alpha
Helix 44
AE8
L
475 491Right-handed alpha
Helix 45
AE9
L
499 509Right-handed alpha
Helix 46
AF1
L
509 516Right-handed alpha
Helix 47
AF2
L
523 535Right-handed alpha
Helix 48
AF3
L
536 555Right-handed alpha
Helix 49
AF4
M
3 15Right-handed alpha
Helix 50
AF5
M
21 29Right-handed alpha
Helix 51
AF6
M
44 63Right-handed alpha
Helix 52
AF7
M
64 66Right-handed 310
Helix 53
AF8
M
67 72Right-handed alpha
Helix 54
AF9
M
87 106Right-handed alpha
Helix 55
AG1
M
107 110Right-handed 310
Helix 56
AG2
M
111 126Right-handed alpha
Helix 57
AG3
M
131 139Right-handed alpha
Helix 58
AG4
M
145 153Right-handed alpha
Helix 59
AG5
M
161 167Right-handed 310
Helix 60
AG6
M
175 184Right-handed alpha
Helix 61
AG7
M
186 202Right-handed alpha
Helix 62
AG8
M
206 224Right-handed alpha
Helix 63
AG9
M
227 233Right-handed alpha
Helix 64
AH1
M
234 247Right-handed alpha
Helix 65
AH2
M
250 268Right-handed alpha
Helix 66
AH3
M
271 284Right-handed alpha
Helix 67
AH4
M
291 303Right-handed alpha
Helix 68
AH5
M
316 327Right-handed alpha
Helix 69
AH6
M
328 336Right-handed alpha
Helix 70
AH7
M
344 358Right-handed alpha
Helix 71
AH8
M
363 373Right-handed alpha
Helix 72
AH9
M
376 393Right-handed alpha
Helix 73
AI1
M
397 410Right-handed alpha
Helix 74
AI2
M
411 422Right-handed alpha
Helix 75
AI3
M
424 430Right-handed alpha
Helix 76
AI4
N
151 153Right-handed 310
Helix 77
AI5
N
386 389Right-handed 310
Helix 78
AI6
N
467 473Right-handed alpha
Helix 79
AI7
N
519 525Right-handed alpha
Helix 80
AI8
N
577 579Right-handed 310
Helix 81
AI9
N
613 619Right-handed alpha
Helix 82
AJ1
N
623 628Right-handed alpha
Helix 83
AJ2
O
176 180Right-handed 310
Helix 84
AJ3
O
570 574Right-handed 310
Helix 85
AJ4
O
623 627Right-handed 310
Helix 86
AJ5
O
631 635Right-handed 310
Helix 87
AJ6
O
646 650Right-handed 310
Helix 88
AJ7
O
652 657Right-handed alpha
Helix 89
AJ8
O
670 674Right-handed 310
Helix 90
AJ9
O
722 732Right-handed alpha
Helix 91
AK1
O
734 744Right-handed alpha
Helix 92
AK2
O
747 756Right-handed alpha
Helix 93
AK3
O
759 761Right-handed 310
Helix 94
AK4
O
762 768Right-handed alpha
Helix 95
AK5
O
774 786Right-handed alpha
Helix 96
AK6
O
791 813Right-handed alpha
Helix 97
AK7
O
817 830Right-handed alpha
Helix 98
AK8
O
831 852Right-handed alpha
Helix 99
AK9
P
3 21Right-handed alpha
Helix 100
AL1
P
25 44Right-handed alpha
Helix 101
AL2
P
50 75Right-handed alpha
Helix 102
AL3
P
83 103Right-handed alpha
Helix 103
AL4
P
106 118Right-handed alpha
Helix 104
AL5
P
125 140Right-handed alpha
Helix 105
AL6
P
143 157Right-handed alpha
Helix 106
AL7
P
162 175Right-handed alpha
Helix 107
AL8
P
178 207Right-handed alpha
Helix 108
AL9
P
265 267Right-handed 310
Helix 109
AM1
P
268 288Right-handed alpha
Helix 110
AM2
P
297 326Right-handed alpha
Helix 111
AM3
P
329 346Right-handed alpha
Helix 112
AM4
P
347 349Right-handed 310
Helix 113
AM5
P
353 367Right-handed alpha
Helix 114
AM6
P
380 397Right-handed alpha
Helix 115
AM7
P
398 415Right-handed alpha
Helix 116
AM8
P
419 426Right-handed alpha
Helix 117
AM9
Q
288 304Right-handed alpha
Helix 118
AN1
Q
309 316Right-handed alpha
Helix 119
AN2
Q
322 325Right-handed alpha
Helix 120
AN3
Q
706 728Right-handed alpha
Helix 121
AN4
Q
744 778Right-handed alpha
Helix 122
AN5
Q
791 798Right-handed alpha
Helix 123
AN6
Q
800 811Right-handed alpha
Helix 124
AN7
Q
813 818Right-handed alpha
Helix 125
AN8
Q
818 823Right-handed alpha
Helix 126
AN9
Q
825 840Right-handed alpha
Helix 127
AO1
Q
842 864Right-handed alpha
Helix 128
AO2
Q
864 869Right-handed alpha
Helix 129
AO3
Q
873 916Right-handed alpha
Helix 130
AO4
R
650 675Right-handed alpha
Helix 131
AO5
R
677 689Right-handed alpha
Helix 132
AO6
R
690 704Right-handed alpha
Helix 133
AO7
R
721 730Right-handed alpha
Helix 134
AO8
R
732 746Right-handed alpha
Helix 135
AO9
R
747 748Right-handed 310
Helix 136
AP1
R
749 751Right-handed 310
Helix 137
AP2
R
752 766Right-handed alpha
Helix 138
AP3
R
768 775Right-handed alpha
Helix 139
AP4
R
777 802Right-handed alpha
Helix 140
AP5
R
803 817Right-handed alpha
Helix 141
AP6
S
16 27Right-handed alpha
Helix 142
AP7
S
30 38Right-handed alpha
Helix 143
AP8
S
127 132Right-handed alpha
Helix 144
AP9
S
142 146Right-handed 310
Helix 145
AQ1
S
157 172Right-handed alpha
Helix 146
AQ2
S
175 181Right-handed alpha
Helix 147
AQ3
S
206 214Right-handed alpha
Helix 148
AQ4
S
472 476Right-handed 310
Helix 149
AQ5
S
498 503Right-handed alpha
Helix 150
AQ6
T
658 660Right-handed 310
Helix 151
AQ7
T
729 736Right-handed alpha
Helix 152
AQ8
T
816 826Right-handed alpha
Helix 153
AQ9
T
830 840Right-handed alpha
Helix 154
AR1
T
844 849Right-handed alpha
Helix 155
AR2
T
858 874Right-handed alpha
Helix 156
AR3
T
877 898Right-handed alpha
Helix 157
AR4
T
902 917Right-handed alpha
Helix 158
AR5
T
919 939Right-handed alpha
Helix 159
AR6
U
37 54Right-handed alpha
Helix 160
AR7
U
189 191Right-handed 310
Helix 161
AR8
U
387 404Right-handed alpha
Helix 162
AR9
U
407 415Right-handed alpha
Helix 163
AS1
U
420 438Right-handed alpha
Helix 164
AS2
W
87 95Right-handed alpha
Helix 165
AS3
W
96 102Right-handed alpha
Helix 166
AS4
W
357 361Right-handed 310
Helix 167
AS5
W
421 435Right-handed alpha
Helix 168
AS6
W
438 442Right-handed 310
Helix 169
AS7
Z
6 11Right-handed alpha
Helix 170
AS8
Z
24 26Right-handed 310
Helix 171
AS9
Z
27 37Right-handed alpha
Helix 172
AT1
Z
41 62Right-handed alpha
Helix 173
AT2
Z
68 85Right-handed alpha
Helix 174
AT3
Z
95 100Right-handed alpha
Helix 175
AT4
Z
102 108Right-handed alpha
Helix 176
AT5
Z
110 118Right-handed alpha
Helix 177
AT6
Z
123 134Right-handed alpha
Helix 178
AT7
A
427 452Right-handed alpha
Helix 179
AT8
D
195 207Right-handed alpha
Helix 180
AT9
a
31 38Right-handed alpha
Helix 181
AU1
a
40 45Right-handed alpha
Helix 182
AU2
a
59 70Right-handed alpha
Helix 183
AU3
a
75 86Right-handed alpha
Helix 184
AU4
a
104 113Right-handed alpha
Helix 185
AU5
a
121 134Right-handed alpha
Helix 186
AU6
a
135 140Right-handed 310
Helix 187
AU7
a
146 164Right-handed alpha
Helix 188
AU8
a
171 200Right-handed alpha
Helix 189
AU9
a
205 210Right-handed alpha
Helix 190
AV1
a
212 223Right-handed alpha
Helix 191
AV2
a
243 254Right-handed alpha
Helix 192
AV3
a
265 300Right-handed alpha
Helix 193
AV4
a
300 307Right-handed alpha
Helix 194
AV5
a
308 319Right-handed alpha
Helix 195
AV6
a
322 327Right-handed alpha
Helix 196
AV7
a
371 393Right-handed alpha
Helix 197
AV8
a
398 415Right-handed alpha
Helix 198
AV9
b
22 26Right-handed alpha
Helix 199
AW1
b
27 29Right-handed 310
Helix 200
AW2
b
35 42Right-handed alpha
Helix 201
AW3
b
53 67Right-handed alpha
Helix 202
AW4
b
70 78Right-handed alpha
Helix 203
AW5
b
91 95Right-handed 310
Helix 204
AW6
b
110 125Right-handed alpha
Helix 205
AW7
b
134 153Right-handed alpha
Helix 206
AW8
b
160 187Right-handed alpha
Helix 207
AW9
b
193 199Right-handed alpha
Helix 208
AX1
b
201 213Right-handed alpha
Helix 209
AX2
b
214 221Right-handed alpha
Helix 210
AX3
b
230 241Right-handed alpha
Helix 211
AX4
b
254 284Right-handed alpha
Helix 212
AX5
b
294 304Right-handed alpha
Helix 213
AX6
b
305 311Right-handed alpha
Helix 214
AX7
b
313 319Right-handed alpha
Helix 215
AX8
b
323 331Right-handed alpha
Helix 216
AX9
b
339 345Right-handed 310
Helix 217
AY1
b
354 376Right-handed alpha
Helix 218
AY2
b
384 402Right-handed alpha
Helix 219
AY3
b
428 432Right-handed 310
Helix 220
AY4
c
149 158Right-handed alpha
Helix 221
AY5
c
180 189Right-handed alpha
Helix 222
AY6
c
200 211Right-handed alpha
Helix 223
AY7
c
226 231Right-handed 310
Helix 224
AY8
c
248 258Right-handed alpha
Helix 225
AY9
c
273 277Right-handed alpha
Helix 226
AZ1
c
281 295Right-handed alpha
Helix 227
AZ2
d
149 158Right-handed alpha
Helix 228
AZ3
d
175 179Right-handed 310
Helix 229
AZ4
d
180 189Right-handed alpha
Helix 230
AZ5
d
203 212Right-handed alpha
Helix 231
AZ6
d
226 231Right-handed 310
Helix 232
AZ7
d
248 258Right-handed alpha
Helix 233
AZ8
d
281 295Right-handed alpha
Helix 234
AZ9
e
13 28Right-handed alpha
Helix 235
BA1
e
36 46Right-handed alpha
Helix 236
BA2
e
60 64Right-handed 310
Helix 237
BA3
e
65 74Right-handed alpha
Helix 238
BA4
e
83 91Right-handed alpha
Helix 239
BA5
e
110 124Right-handed alpha
Helix 240
BA6
f
13 30Right-handed alpha
Helix 241
BA7
f
36 46Right-handed alpha
Helix 242
BA8
f
61 64Right-handed 310
Helix 243
BA9
f
65 74Right-handed alpha
Helix 244
BB1
f
84 92Right-handed alpha
Helix 245
BB2
f
110 125Right-handed alpha
Helix 246
BB3
g
135 139Right-handed 310
Helix 247
BB4
g
447 453Right-handed alpha
Helix 248
BB5
g
456 460Right-handed 310
Helix 249
BB6
l
25 29Right-handed 310
Helix 250
BB7
x
1 23Right-handed alpha
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