Analysis of interatomic Contacts of Structural Units in PDB entry:
6NDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NDI entry

There are 2 chains in PDB entry 6NDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 59HIS 331
B
 PRO 61HIS 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6NDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 90Right-handed alpha
Helix 2
AA2
A
105 116Right-handed alpha
Helix 3
AA3
A
134 138Right-handed 310
Helix 4
AA4
A
160 175Right-handed alpha
Helix 5
AA5
A
189 206Right-handed alpha
Helix 6
AA6
A
209 213Right-handed 310
Helix 7
AA7
A
221 226Right-handed 310
Helix 8
AA8
A
227 235Right-handed alpha
Helix 9
AA9
A
250 264Right-handed alpha
Helix 10
AB1
A
297 311Right-handed alpha
Helix 11
AB2
B
77 90Right-handed alpha
Helix 12
AB3
B
105 116Right-handed alpha
Helix 13
AB4
B
134 138Right-handed 310
Helix 14
AB5
B
160 175Right-handed alpha
Helix 15
AB6
B
189 206Right-handed alpha
Helix 16
AB7
B
209 213Right-handed 310
Helix 17
AB8
B
221 226Right-handed 310
Helix 18
AB9
B
227 235Right-handed alpha
Helix 19
AC1
B
250 264Right-handed alpha
Helix 20
AC2
B
297 311Right-handed alpha
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There are 8 sheets in PDB entry 6NDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 99first strand
Strand 2
A
63 68parallel
Strand 3
A
120 129parallel
Strand 4
A
143 147parallel
Strand 5
A
155 159parallel
Strand 6
A
318 321parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
180 184parallel
Strand 3
A
245 248parallel
Strand 4
A
273 275parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
240 241anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
325 326anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 99first strand
Strand 2
B
63 68parallel
Strand 3
B
120 129parallel
Strand 4
B
143 147parallel
Strand 5
B
155 159parallel
Strand 6
B
318 321parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 217first strand
Strand 2
B
180 184parallel
Strand 3
B
245 248parallel
Strand 4
B
273 275parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 237first strand
Strand 2
B
240 241anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 294first strand
Strand 2
B
325 326anti-parallel
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