Analysis of interatomic Contacts of Structural Units in PDB entry:
6NDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NDQ entry

There are 2 chains in PDB entry 6NDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1HIS 190
B
 HIS 1HIS 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6NDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 19Right-handed alpha
Helix 2
AA2
A
20 22Right-handed 310
Helix 3
AA3
A
26 31Right-handed alpha
Helix 4
AA4
A
31 41Right-handed alpha
Helix 5
AA5
A
42 47Right-handed alpha
Helix 6
AA6
A
48 50Right-handed 310
Helix 7
AA7
A
59 64Right-handed alpha
Helix 8
AA8
A
74 79Right-handed alpha
Helix 9
AA9
A
80 85Right-handed 310
Helix 10
AB1
A
130 132Right-handed 310
Helix 11
AB2
B
9 19Right-handed alpha
Helix 12
AB3
B
20 22Right-handed 310
Helix 13
AB4
B
26 31Right-handed alpha
Helix 14
AB5
B
31 41Right-handed alpha
Helix 15
AB6
B
42 47Right-handed alpha
Helix 16
AB7
B
59 64Right-handed alpha
Helix 17
AB8
B
74 79Right-handed alpha
Helix 18
AB9
B
80 85Right-handed 310
Helix 19
AC1
B
130 132Right-handed 310
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There are 6 sheets in PDB entry 6NDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
97 104anti-parallel
Strand 3
A
148 154anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
175 185anti-parallel
Strand 3
A
92 94parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
175 185anti-parallel
Strand 3
A
160 170anti-parallel
Strand 4
A
110 118anti-parallel
Strand 5
A
134 139anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
97 104anti-parallel
Strand 3
B
148 154anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
175 185anti-parallel
Strand 3
B
92 94parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
175 185anti-parallel
Strand 3
B
160 170anti-parallel
Strand 4
B
110 118anti-parallel
Strand 5
B
134 139anti-parallel
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