Analysis of interatomic Contacts of Structural Units in PDB entry:
6NDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NDS entry

There is 1 chain in PDB entry 6NDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6NDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
16 21Right-handed alpha
Helix 3
AA3
A
27 39Right-handed alpha
Helix 4
AA4
A
57 61Right-handed 310
Helix 5
AA5
A
62 70Right-handed alpha
Helix 6
AA6
A
84 94Right-handed alpha
Helix 7
AA7
A
106 115Right-handed alpha
Helix 8
AA8
A
117 133Right-handed alpha
Helix 9
AA9
A
155 169Right-handed alpha
Helix 10
AB1
A
184 196Right-handed alpha
Helix 11
AB2
A
214 225Right-handed alpha
Helix 12
AB3
A
233 237Right-handed 310
Helix 13
AB4
A
251 263Right-handed alpha
Helix 14
AB5
A
269 278Right-handed alpha
Helix 15
AB6
A
279 285Right-handed alpha
Helix 16
AB7
A
290 296Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6NDS.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
45 50parallel
Strand 3
A
77 82parallel
Strand 4
A
98 104parallel
Strand 5
A
137 143parallel
Strand 6
A
174 178parallel
Strand 7
A
204 208parallel
Strand 8
A
229 232parallel
Strand 9
A
9 12parallel
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