Analysis of interatomic Contacts of Structural Units in PDB entry:
6NDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NDX entry

There are 6 chains in PDB entry 6NDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP -10ILE 207
A
 ASN -8ILE 207
C
 ALA 1ALA 10
C
 ASN 12GLN 173
D
 ALA 1ALA 10
D
 ASN 12GLU 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6NDX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
25 31Right-handed alpha
Helix 2
AA2
B
74 79Right-handed alpha
Helix 3
AA3
A
25 31Right-handed alpha
Helix 4
AA4
A
74 79Right-handed alpha
Helix 5
AA5
C
27 31Right-handed 310
Helix 6
AA6
D
25 32Right-handed alpha
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There are 13 sheets in PDB entry 6NDX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-2 -1first strand
Strand 2
B
179 186anti-parallel
Strand 3
B
192 196anti-parallel
Strand 4
B
202 205anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
120 128anti-parallel
Strand 3
B
142 151anti-parallel
Strand 4
B
6 12parallel
Strand 5
B
167 173anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 41first strand
Strand 2
B
47 56anti-parallel
Strand 3
B
63 70anti-parallel
Strand 4
B
93 98anti-parallel
Strand 5
B
104 109anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
142 147parallel
Strand 3
A
123 128anti-parallel
Strand 4
A
81 83anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 41first strand
Strand 2
A
47 55anti-parallel
Strand 3
A
65 70anti-parallel
Strand 4
A
93 95anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 186first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
202 206anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 83first strand
Strand 2
C
120 125anti-parallel
Strand 3
C
145 151anti-parallel
Strand 4
C
6 12parallel
Strand 5
C
159 160parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 83first strand
Strand 2
C
120 125anti-parallel
Strand 3
C
145 151anti-parallel
Strand 4
C
6 12parallel
Strand 5
C
169 171anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 41first strand
Strand 2
C
47 56anti-parallel
Strand 3
C
63 70anti-parallel
Strand 4
C
93 98anti-parallel
Strand 5
C
104 109anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 122first strand
Strand 2
D
147 151anti-parallel
Strand 3
D
7 12parallel
Strand 4
D
159 160parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 122first strand
Strand 2
D
147 151anti-parallel
Strand 3
D
7 12parallel
Strand 4
D
169 171anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 41first strand
Strand 2
D
47 56anti-parallel
Strand 3
D
63 70anti-parallel
Strand 4
D
93 98anti-parallel
Strand 5
D
104 109anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 82first strand
Strand 2
D
125 128anti-parallel
Strand 3
D
142 144anti-parallel
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