Analysis of interatomic Contacts of Structural Units in PDB entry:
6NDY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NDY entry

There are 6 chains in PDB entry 6NDY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 116	GLY 433
B	ASN 112	ASN 437
C	ASN 112	ASN 437
D	ASN 112	ASN 437
E	GLU 126	GLY 433
G	GLY 1	UNK 25

There are 64 helices in PDB entry 6NDY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	116	122	Right-handed 310
Helix 2	AA2	A	138	155	Right-handed alpha
Helix 3	AA3	A	178	189	Right-handed alpha
Helix 4	AA4	A	208	224	Right-handed alpha
Helix 5	AA5	A	233	237	Right-handed 310
Helix 6	AA6	A	245	260	Right-handed alpha
Helix 7	AA7	A	283	290	Right-handed alpha
Helix 8	AA8	A	300	313	Right-handed alpha
Helix 9	AA9	A	320	331	Right-handed alpha
Helix 10	AB1	A	335	356	Right-handed alpha
Helix 11	AB2	A	403	413	Right-handed alpha
Helix 12	AB3	A	418	433	Right-handed alpha
Helix 13	AB4	B	113	120	Right-handed alpha
Helix 14	AB5	B	121	123	Right-handed 310
Helix 15	AB6	B	138	150	Right-handed alpha
Helix 16	AB7	B	150	155	Right-handed alpha
Helix 17	AB8	B	178	190	Right-handed alpha
Helix 18	AB9	B	208	224	Right-handed alpha
Helix 19	AC1	B	245	261	Right-handed alpha
Helix 20	AC2	B	283	290	Right-handed alpha
Helix 21	AC3	B	300	313	Right-handed alpha
Helix 22	AC4	B	320	331	Right-handed alpha
Helix 23	AC5	B	335	356	Right-handed alpha
Helix 24	AC6	B	402	413	Right-handed alpha
Helix 25	AC7	B	420	433	Right-handed alpha
Helix 26	AC8	C	113	120	Right-handed alpha
Helix 27	AC9	C	138	155	Right-handed alpha
Helix 28	AD1	C	178	190	Right-handed alpha
Helix 29	AD2	C	209	224	Right-handed alpha
Helix 30	AD3	C	245	261	Right-handed alpha
Helix 31	AD4	C	283	290	Right-handed alpha
Helix 32	AD5	C	300	313	Right-handed alpha
Helix 33	AD6	C	320	331	Right-handed alpha
Helix 34	AD7	C	335	356	Right-handed alpha
Helix 35	AD8	C	402	413	Right-handed alpha
Helix 36	AD9	C	420	433	Right-handed alpha
Helix 37	AE1	D	113	120	Right-handed alpha
Helix 38	AE2	D	121	123	Right-handed 310
Helix 39	AE3	D	131	135	Right-handed 310
Helix 40	AE4	D	138	155	Right-handed alpha
Helix 41	AE5	D	178	189	Right-handed alpha
Helix 42	AE6	D	198	203	Right-handed alpha
Helix 43	AE7	D	209	224	Right-handed alpha
Helix 44	AE8	D	234	237	Right-handed 310
Helix 45	AE9	D	245	261	Right-handed alpha
Helix 46	AF1	D	278	282	Right-handed 310
Helix 47	AF2	D	283	290	Right-handed alpha
Helix 48	AF3	D	300	312	Right-handed alpha
Helix 49	AF4	D	320	331	Right-handed alpha
Helix 50	AF5	D	335	356	Right-handed alpha
Helix 51	AF6	D	402	413	Right-handed alpha
Helix 52	AF7	D	420	433	Right-handed alpha
Helix 53	AF8	E	138	155	Right-handed alpha
Helix 54	AF9	E	178	190	Right-handed alpha
Helix 55	AG1	E	199	203	Right-handed 310
Helix 56	AG2	E	211	224	Right-handed alpha
Helix 57	AG3	E	233	238	Right-handed alpha
Helix 58	AG4	E	245	261	Right-handed alpha
Helix 59	AG5	E	283	290	Right-handed alpha
Helix 60	AG6	E	300	313	Right-handed alpha
Helix 61	AG7	E	320	331	Right-handed alpha
Helix 62	AG8	E	335	356	Right-handed alpha
Helix 63	AG9	E	402	413	Right-handed alpha
Helix 64	AH1	E	419	432	Right-handed alpha

There are 11 sheets in PDB entry 6NDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	169	172	parallel
Strand 3	A	292	295	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	197	first strand
Strand 2	A	227	231	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	363	first strand
Strand 2	A	372	375	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	197	first strand
Strand 2	B	227	232	parallel
Strand 3	B	271	276	parallel
Strand 4	B	169	172	parallel
Strand 5	B	293	295	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	362	first strand
Strand 2	B	373	375	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	197	first strand
Strand 2	C	227	232	parallel
Strand 3	C	271	276	parallel
Strand 4	C	168	172	parallel
Strand 5	C	292	295	parallel
Strand 6	C	434	435	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	375	first strand
Strand 2	C	360	362	anti-parallel
Strand 3	C	383	384	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	197	first strand
Strand 2	D	227	232	parallel
Strand 3	D	272	276	parallel
Strand 4	D	169	172	parallel
Strand 5	D	292	295	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	375	first strand
Strand 2	D	359	363	anti-parallel
Strand 3	D	384	385	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	195	first strand
Strand 2	E	227	232	parallel
Strand 3	E	270	275	parallel
Strand 4	E	169	172	parallel
Strand 5	E	292	295	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	372	375	first strand
Strand 2	E	360	363	anti-parallel
Strand 3	E	383	384	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NDY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NDY