Analysis of interatomic Contacts of Structural Units in PDB entry:
6NDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NDZ entry

There are 6 chains in PDB entry 6NDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5HIS 126
B
 SER 1GLN 190
C
 LEU 6HIS 125
D
 SER 1GLN 190
E
 LEU 6HIS 125
F
 SER 1LYS 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 6NDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 17Right-handed 310
Helix 2
AA2
A
34 44Right-handed alpha
Helix 3
AA3
A
45 52Right-handed alpha
Helix 4
AA4
A
56 66Right-handed alpha
Helix 5
AA5
A
80 98Right-handed alpha
Helix 6
AA6
A
103 107Right-handed 310
Helix 7
AA7
B
2 14Right-handed alpha
Helix 8
AA8
B
15 25Right-handed alpha
Helix 9
AA9
B
38 46Right-handed alpha
Helix 10
AB1
B
48 58Right-handed alpha
Helix 11
AB2
B
71 79Right-handed alpha
Helix 12
AB3
B
81 91Right-handed alpha
Helix 13
AB4
B
104 112Right-handed alpha
Helix 14
AB5
B
114 124Right-handed alpha
Helix 15
AB6
B
132 136Right-handed 310
Helix 16
AB7
B
137 145Right-handed alpha
Helix 17
AB8
B
147 157Right-handed alpha
Helix 18
AB9
B
170 179Right-handed alpha
Helix 19
AC1
B
180 189Right-handed alpha
Helix 20
AC2
C
13 17Right-handed 310
Helix 21
AC3
C
34 44Right-handed alpha
Helix 22
AC4
C
45 52Right-handed alpha
Helix 23
AC5
C
56 66Right-handed alpha
Helix 24
AC6
C
80 98Right-handed alpha
Helix 25
AC7
C
103 107Right-handed 310
Helix 26
AC8
D
2 14Right-handed alpha
Helix 27
AC9
D
15 25Right-handed alpha
Helix 28
AD1
D
38 46Right-handed alpha
Helix 29
AD2
D
48 58Right-handed alpha
Helix 30
AD3
D
71 79Right-handed alpha
Helix 31
AD4
D
81 91Right-handed alpha
Helix 32
AD5
D
104 112Right-handed alpha
Helix 33
AD6
D
114 124Right-handed alpha
Helix 34
AD7
D
132 136Right-handed 310
Helix 35
AD8
D
137 145Right-handed alpha
Helix 36
AD9
D
147 157Right-handed alpha
Helix 37
AE1
D
170 178Right-handed alpha
Helix 38
AE2
D
180 189Right-handed alpha
Helix 39
AE3
E
13 17Right-handed 310
Helix 40
AE4
E
34 44Right-handed alpha
Helix 41
AE5
E
45 52Right-handed alpha
Helix 42
AE6
E
56 66Right-handed alpha
Helix 43
AE7
E
80 97Right-handed alpha
Helix 44
AE8
E
103 107Right-handed 310
Helix 45
AE9
F
2 14Right-handed alpha
Helix 46
AF1
F
15 25Right-handed alpha
Helix 47
AF2
F
38 46Right-handed alpha
Helix 48
AF3
F
48 58Right-handed alpha
Helix 49
AF4
F
71 79Right-handed alpha
Helix 50
AF5
F
81 91Right-handed alpha
Helix 51
AF6
F
99 103Right-handed 310
Helix 52
AF7
F
104 112Right-handed alpha
Helix 53
AF8
F
114 124Right-handed alpha
Helix 54
AF9
F
132 136Right-handed 310
Helix 55
AG1
F
137 145Right-handed alpha
Helix 56
AG2
F
147 157Right-handed alpha
Helix 57
AG3
F
165 169Right-handed 310
Helix 58
AG4
F
170 178Right-handed alpha
Helix 59
AG5
F
180 189Right-handed alpha
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There are 3 sheets in PDB entry 6NDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
23 24anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 10first strand
Strand 2
C
23 24anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 10first strand
Strand 2
E
23 24anti-parallel
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