Analysis of interatomic Contacts of Structural Units in PDB entry:
6NE0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NE0 entry

There are 12 chains in PDB entry 6NE0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 11	LYS 426
B	VAL 3	VAL 322
C	LEU 25	GLU 357
D	LEU 25	GLU 357
E	ILE 24	GLU 357
F	ILE 24	ALA 358
G	LEU 25	GLU 357
H	LEU 25	GLU 357
L	PHE -1	PHE 187
M	C 1	C 58
N	C 1	T 44
O	A 1	G 21

There are 67 helices in PDB entry 6NE0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	31	Right-handed alpha
Helix 2	AA2	A	39	47	Right-handed alpha
Helix 3	AA3	A	50	59	Right-handed alpha
Helix 4	AA4	A	111	113	Right-handed 310
Helix 5	AA5	A	114	122	Right-handed alpha
Helix 6	AA6	A	128	133	Right-handed alpha
Helix 7	AA7	A	138	145	Right-handed alpha
Helix 8	AA8	A	149	162	Right-handed alpha
Helix 9	AA9	A	199	206	Right-handed alpha
Helix 10	AB1	A	210	221	Right-handed alpha
Helix 11	AB2	A	247	251	Right-handed 310
Helix 12	AB3	A	253	258	Right-handed alpha
Helix 13	AB4	A	296	310	Right-handed alpha
Helix 14	AB5	A	315	340	Right-handed alpha
Helix 15	AB6	A	382	399	Right-handed alpha
Helix 16	AB7	A	407	424	Right-handed alpha
Helix 17	AB8	B	33	48	Right-handed alpha
Helix 18	AB9	B	124	135	Right-handed alpha
Helix 19	AC1	B	165	178	Right-handed alpha
Helix 20	AC2	B	190	201	Right-handed alpha
Helix 21	AC3	B	208	216	Right-handed alpha
Helix 22	AC4	C	130	148	Right-handed alpha
Helix 23	AC5	C	151	163	Right-handed alpha
Helix 24	AC6	C	208	224	Right-handed alpha
Helix 25	AC7	C	275	283	Right-handed alpha
Helix 26	AC8	C	322	331	Right-handed alpha
Helix 27	AC9	C	339	352	Right-handed alpha
Helix 28	AD1	D	131	148	Right-handed alpha
Helix 29	AD2	D	150	163	Right-handed alpha
Helix 30	AD3	D	208	223	Right-handed alpha
Helix 31	AD4	D	275	283	Right-handed alpha
Helix 32	AD5	D	293	297	Right-handed 310
Helix 33	AD6	D	322	332	Right-handed alpha
Helix 34	AD7	D	338	352	Right-handed alpha
Helix 35	AD8	E	130	148	Right-handed alpha
Helix 36	AD9	E	152	163	Right-handed alpha
Helix 37	AE1	E	210	223	Right-handed alpha
Helix 38	AE2	E	275	284	Right-handed alpha
Helix 39	AE3	E	322	332	Right-handed alpha
Helix 40	AE4	E	338	352	Right-handed alpha
Helix 41	AE5	F	51	55	Right-handed 310
Helix 42	AE6	F	82	92	Right-handed alpha
Helix 43	AE7	F	130	148	Right-handed alpha
Helix 44	AE8	F	150	163	Right-handed alpha
Helix 45	AE9	F	208	224	Right-handed alpha
Helix 46	AF1	F	275	284	Right-handed alpha
Helix 47	AF2	F	293	297	Right-handed 310
Helix 48	AF3	F	322	332	Right-handed alpha
Helix 49	AF4	F	338	352	Right-handed alpha
Helix 50	AF5	G	86	91	Right-handed alpha
Helix 51	AF6	G	130	148	Right-handed alpha
Helix 52	AF7	G	150	163	Right-handed alpha
Helix 53	AF8	G	208	223	Right-handed alpha
Helix 54	AF9	G	275	283	Right-handed alpha
Helix 55	AG1	G	322	331	Right-handed alpha
Helix 56	AG2	G	338	352	Right-handed alpha
Helix 57	AG3	H	82	92	Right-handed alpha
Helix 58	AG4	H	130	148	Right-handed alpha
Helix 59	AG5	H	151	163	Right-handed alpha
Helix 60	AG6	H	208	223	Right-handed alpha
Helix 61	AG7	H	275	285	Right-handed alpha
Helix 62	AG8	H	322	331	Right-handed alpha
Helix 63	AG9	H	340	352	Right-handed alpha
Helix 64	AH1	L	16	36	Right-handed alpha
Helix 65	AH2	L	64	70	Right-handed alpha
Helix 66	AH3	L	108	121	Right-handed alpha
Helix 67	AH4	L	123	130	Right-handed alpha

There are 42 sheets in PDB entry 6NE0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	187	188	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	B	279	290	parallel
Strand 3	B	185	189	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	B	279	290	parallel
Strand 3	B	248	257	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	B	79	81	parallel
Strand 3	B	70	71	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	B	28	29	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	103	113	anti-parallel
Strand 3	B	8	17	anti-parallel
Strand 4	B	144	145	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	103	113	anti-parallel
Strand 3	B	8	17	anti-parallel
Strand 4	B	157	160	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	315	317	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	353	356	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	196	first strand
Strand 2	C	177	184	anti-parallel
Strand 3	C	228	237	anti-parallel
Strand 4	C	109	118	anti-parallel
Strand 5	C	42	47	anti-parallel
Strand 6	C	273	274	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	98	100	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	287	first strand
Strand 2	C	299	300	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	312	313	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	31	33	anti-parallel
Strand 3	D	353	355	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	39	first strand
Strand 2	D	109	118	anti-parallel
Strand 3	D	228	237	anti-parallel
Strand 4	D	177	184	anti-parallel
Strand 5	D	189	192	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	47	first strand
Strand 2	D	109	118	anti-parallel
Strand 3	D	228	237	anti-parallel
Strand 4	D	177	184	anti-parallel
Strand 5	D	195	196	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	71	first strand
Strand 2	D	93	102	anti-parallel
Strand 3	D	243	244	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	287	first strand
Strand 2	D	299	300	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	307	first strand
Strand 2	D	312	313	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	128	first strand
Strand 2	E	30	33	anti-parallel
Strand 3	E	353	356	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	39	first strand
Strand 2	E	109	118	anti-parallel
Strand 3	E	228	237	anti-parallel
Strand 4	E	177	184	anti-parallel
Strand 5	E	189	196	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	39	first strand
Strand 2	E	109	118	anti-parallel
Strand 3	E	42	47	anti-parallel
Strand 4	E	271	274	anti-parallel
Strand 5	E	267	268	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	70	first strand
Strand 2	E	94	102	anti-parallel
Strand 3	E	243	244	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	285	287	first strand
Strand 2	E	299	300	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	31	33	anti-parallel
Strand 3	F	353	355	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	39	first strand
Strand 2	F	109	118	anti-parallel
Strand 3	F	228	237	anti-parallel
Strand 4	F	177	184	anti-parallel
Strand 5	F	189	196	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	39	first strand
Strand 2	F	109	118	anti-parallel
Strand 3	F	42	47	anti-parallel
Strand 4	F	273	274	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	70	first strand
Strand 2	F	94	102	anti-parallel
Strand 3	F	243	244	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	306	307	first strand
Strand 2	F	312	313	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	33	first strand
Strand 2	G	353	355	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	39	first strand
Strand 2	G	109	118	anti-parallel
Strand 3	G	228	236	anti-parallel
Strand 4	G	177	184	anti-parallel
Strand 5	G	189	196	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	39	first strand
Strand 2	G	109	118	anti-parallel
Strand 3	G	42	47	anti-parallel
Strand 4	G	273	274	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	68	first strand
Strand 2	G	96	100	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	306	307	first strand
Strand 2	G	312	313	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	128	first strand
Strand 2	H	31	33	anti-parallel
Strand 3	H	353	355	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	39	first strand
Strand 2	H	109	118	anti-parallel
Strand 3	H	228	237	anti-parallel
Strand 4	H	177	184	anti-parallel
Strand 5	H	189	196	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	39	first strand
Strand 2	H	109	118	anti-parallel
Strand 3	H	42	47	anti-parallel
Strand 4	H	271	274	anti-parallel
Strand 5	H	267	268	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	70	first strand
Strand 2	H	94	102	anti-parallel
Strand 3	H	243	244	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	306	307	first strand
Strand 2	H	312	313	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	7	8	first strand
Strand 2	L	57	60	anti-parallel
Strand 3	L	42	43	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	101	103	first strand
Strand 2	L	157	160	anti-parallel
Strand 3	L	143	144	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	175	176	first strand
Strand 2	L	180	181	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NE0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NE0