Analysis of interatomic Contacts of Structural Units in PDB entry:
6NE1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NE1 entry

There are 2 chains in PDB entry 6NE1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 44GLY 161
B
 GLU 2LEU 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6NE1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 54Right-handed 310
Helix 2
AA2
A
71 80Right-handed alpha
Helix 3
AA3
A
82 89Right-handed alpha
Helix 4
AA4
A
93 103Right-handed alpha
Helix 5
AA5
A
117 134Right-handed alpha
Helix 6
AA6
A
140 144Right-handed 310
Helix 7
AA7
B
3 14Right-handed alpha
Helix 8
AA8
B
15 24Right-handed alpha
Helix 9
AA9
B
38 47Right-handed alpha
Helix 10
AB1
B
48 58Right-handed alpha
Helix 11
AB2
B
66 70Right-handed 310
Helix 12
AB3
B
71 79Right-handed alpha
Helix 13
AB4
B
81 91Right-handed alpha
Helix 14
AB5
B
99 103Right-handed 310
Helix 15
AB6
B
104 112Right-handed alpha
Helix 16
AB7
B
114 124Right-handed alpha
Helix 17
AB8
B
132 136Right-handed 310
Helix 18
AB9
B
137 145Right-handed alpha
Helix 19
AC1
B
147 156Right-handed alpha
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There are 2 sheets in PDB entry 6NE1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
60 61anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
113 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il