Analysis of interatomic Contacts of Structural Units in PDB entry:
6NE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NE9 entry

There are 2 chains in PDB entry 6NE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 25LYS 382
B
 THR 25LYS 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6NE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
128 133Right-handed 310
Helix 2
AA2
A
163 168Right-handed 310
Helix 3
AA3
A
195 206Right-handed alpha
Helix 4
AA4
A
234 242Right-handed alpha
Helix 5
AA5
A
242 251Right-handed alpha
Helix 6
AA6
A
256 258Right-handed 310
Helix 7
AA7
A
266 279Right-handed alpha
Helix 8
AA8
A
313 321Right-handed alpha
Helix 9
AA9
A
335 351Right-handed alpha
Helix 10
AB1
A
365 377Right-handed alpha
Helix 11
AB2
A
378 380Right-handed 310
Helix 12
AB3
B
128 133Right-handed 310
Helix 13
AB4
B
195 206Right-handed alpha
Helix 14
AB5
B
234 242Right-handed alpha
Helix 15
AB6
B
242 251Right-handed alpha
Helix 16
AB7
B
256 258Right-handed 310
Helix 17
AB8
B
266 279Right-handed alpha
Helix 18
AB9
B
313 321Right-handed alpha
Helix 19
AC1
B
335 351Right-handed alpha
Helix 20
AC2
B
365 377Right-handed alpha
Helix 21
AC3
B
378 380Right-handed 310
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There are 8 sheets in PDB entry 6NE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
43 44anti-parallel
Strand 3
A
50 55anti-parallel
Strand 4
A
80 84anti-parallel
Strand 5
A
74 75anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
62 66anti-parallel
Strand 3
A
91 99anti-parallel
Strand 4
A
102 104anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
62 66anti-parallel
Strand 3
A
91 99anti-parallel
Strand 4
A
117 124anti-parallel
Strand 5
A
111 114anti-parallel
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There are 16 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 359first strand
Strand 2
A
323 329parallel
Strand 3
A
285 289parallel
Strand 4
A
260 265parallel
Strand 5
A
176 180parallel
Strand 6
A
213 216parallel
Strand 7
A
154 161anti-parallel
Strand 8
A
142 149anti-parallel
Strand 9
B
141 149anti-parallel
Strand 10
B
154 162anti-parallel
Strand 11
B
213 216anti-parallel
Strand 12
B
176 180parallel
Strand 13
B
260 265parallel
Strand 14
B
285 289parallel
Strand 15
B
323 329parallel
Strand 16
B
355 359parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
43 44anti-parallel
Strand 3
B
50 55anti-parallel
Strand 4
B
80 84anti-parallel
Strand 5
B
74 75anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
62 66anti-parallel
Strand 3
B
91 99anti-parallel
Strand 4
B
102 104anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
62 66anti-parallel
Strand 3
B
91 99anti-parallel
Strand 4
B
121 124anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
117 119anti-parallel
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