Analysis of interatomic Contacts of Structural Units in PDB entry:
6NEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NEE entry

There are 2 chains in PDB entry 6NEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 251
B
 MET 0GLN 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6NEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
43 45Right-handed 310
Helix 3
AA3
A
46 54Right-handed alpha
Helix 4
AA4
A
80 87Right-handed alpha
Helix 5
AA5
A
96 102Right-handed alpha
Helix 6
AA6
A
106 120Right-handed alpha
Helix 7
AA7
A
131 137Right-handed alpha
Helix 8
AA8
A
139 152Right-handed alpha
Helix 9
AA9
A
168 172Right-handed 310
Helix 10
AB1
A
179 198Right-handed alpha
Helix 11
AB2
A
199 206Right-handed alpha
Helix 12
AB3
A
218 224Right-handed alpha
Helix 13
AB4
A
234 238Right-handed 310
Helix 14
AB5
A
239 248Right-handed alpha
Helix 15
AB6
B
16 30Right-handed alpha
Helix 16
AB7
B
43 45Right-handed 310
Helix 17
AB8
B
46 54Right-handed alpha
Helix 18
AB9
B
80 88Right-handed alpha
Helix 19
AC1
B
96 102Right-handed alpha
Helix 20
AC2
B
106 120Right-handed alpha
Helix 21
AC3
B
131 137Right-handed alpha
Helix 22
AC4
B
139 152Right-handed alpha
Helix 23
AC5
B
168 172Right-handed 310
Helix 24
AC6
B
179 198Right-handed alpha
Helix 25
AC7
B
199 206Right-handed alpha
Helix 26
AC8
B
218 224Right-handed alpha
Helix 27
AC9
B
234 238Right-handed 310
Helix 28
AD1
B
239 248Right-handed alpha
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There are 2 sheets in PDB entry 6NEE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
36 41parallel
Strand 3
A
60 64parallel
Strand 4
A
91 94parallel
Strand 5
A
123 128parallel
Strand 6
A
162 166parallel
Strand 7
A
208 211parallel
Strand 8
A
230 233parallel
Strand 9
A
5 10parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
36 41parallel
Strand 3
B
60 64parallel
Strand 4
B
91 94parallel
Strand 5
B
123 128parallel
Strand 6
B
162 166parallel
Strand 7
B
208 211parallel
Strand 8
B
230 233parallel
Strand 9
B
5 10parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il