Analysis of interatomic Contacts of Structural Units in PDB entry:
6NEH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NEH entry

There are 2 chains in PDB entry 6NEH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7LYS 348
B
 VAL 7LYS 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6NEH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 14Right-handed alpha
Helix 2
AA2
A
16 31Right-handed alpha
Helix 3
AA3
A
32 40Right-handed alpha
Helix 4
AA4
A
47 53Right-handed alpha
Helix 5
AA5
A
61 76Right-handed alpha
Helix 6
AA6
A
95 100Right-handed 310
Helix 7
AA7
A
108 116Right-handed alpha
Helix 8
AA8
A
117 125Right-handed alpha
Helix 9
AA9
A
127 133Right-handed alpha
Helix 10
AB1
A
137 144Right-handed alpha
Helix 11
AB2
A
146 154Right-handed alpha
Helix 12
AB3
A
154 180Right-handed alpha
Helix 13
AB4
A
181 186Right-handed 310
Helix 14
AB5
A
197 207Right-handed alpha
Helix 15
AB6
A
217 223Right-handed alpha
Helix 16
AB7
A
252 256Right-handed 310
Helix 17
AB8
A
257 272Right-handed alpha
Helix 18
AB9
A
292 309Right-handed alpha
Helix 19
AC1
A
316 327Right-handed alpha
Helix 20
AC2
B
9 14Right-handed alpha
Helix 21
AC3
B
16 31Right-handed alpha
Helix 22
AC4
B
32 40Right-handed alpha
Helix 23
AC5
B
47 53Right-handed alpha
Helix 24
AC6
B
61 76Right-handed alpha
Helix 25
AC7
B
95 100Right-handed 310
Helix 26
AC8
B
108 116Right-handed alpha
Helix 27
AC9
B
117 125Right-handed alpha
Helix 28
AD1
B
127 133Right-handed alpha
Helix 29
AD2
B
137 144Right-handed alpha
Helix 30
AD3
B
146 154Right-handed alpha
Helix 31
AD4
B
154 180Right-handed alpha
Helix 32
AD5
B
181 186Right-handed 310
Helix 33
AD6
B
197 207Right-handed alpha
Helix 34
AD7
B
217 222Right-handed alpha
Helix 35
AD8
B
252 256Right-handed 310
Helix 36
AD9
B
257 272Right-handed alpha
Helix 37
AE1
B
292 309Right-handed alpha
Helix 38
AE2
B
316 327Right-handed alpha
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There are 4 sheets in PDB entry 6NEH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
87 92anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 234first strand
Strand 2
A
211 216parallel
Strand 3
A
188 192parallel
Strand 4
A
246 250parallel
Strand 5
A
277 283parallel
Strand 6
A
341 347anti-parallel
Strand 7
A
331 338anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
87 91anti-parallel
Strand 3
B
80 84anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 234first strand
Strand 2
B
211 216parallel
Strand 3
B
188 192parallel
Strand 4
B
246 250parallel
Strand 5
B
277 283parallel
Strand 6
B
341 347anti-parallel
Strand 7
B
331 338anti-parallel
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