Analysis of interatomic Contacts of Structural Units in PDB entry:
6NEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NEV entry

There are 2 chains in PDB entry 6NEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 11SER 447
B
 GLN 11SER 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6NEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 34Right-handed alpha
Helix 2
AA2
A
58 68Right-handed alpha
Helix 3
AA3
A
68 77Right-handed alpha
Helix 4
AA4
A
124 135Right-handed alpha
Helix 5
AA5
A
181 189Right-handed alpha
Helix 6
AA6
A
192 196Right-handed 310
Helix 7
AA7
A
211 224Right-handed alpha
Helix 8
AA8
A
271 278Right-handed alpha
Helix 9
AA9
A
282 291Right-handed alpha
Helix 10
AB1
A
321 326Right-handed alpha
Helix 11
AB2
A
333 356Right-handed alpha
Helix 12
AB3
A
360 398Right-handed alpha
Helix 13
AB4
A
399 403Right-handed 310
Helix 14
AB5
A
407 412Right-handed alpha
Helix 15
AB6
A
413 427Right-handed alpha
Helix 16
AB7
A
429 445Right-handed alpha
Helix 17
AB8
B
21 33Right-handed alpha
Helix 18
AB9
B
58 68Right-handed alpha
Helix 19
AC1
B
68 77Right-handed alpha
Helix 20
AC2
B
124 135Right-handed alpha
Helix 21
AC3
B
181 189Right-handed alpha
Helix 22
AC4
B
192 196Right-handed 310
Helix 23
AC5
B
211 219Right-handed alpha
Helix 24
AC6
B
219 225Right-handed alpha
Helix 25
AC7
B
271 278Right-handed alpha
Helix 26
AC8
B
282 291Right-handed alpha
Helix 27
AC9
B
321 326Right-handed alpha
Helix 28
AD1
B
333 356Right-handed alpha
Helix 29
AD2
B
360 398Right-handed alpha
Helix 30
AD3
B
399 403Right-handed 310
Helix 31
AD4
B
404 406Right-handed 310
Helix 32
AD5
B
407 413Right-handed alpha
Helix 33
AD6
B
414 427Right-handed alpha
Helix 34
AD7
B
429 445Right-handed alpha
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There are 8 sheets in PDB entry 6NEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
37 41parallel
Strand 3
A
14 18parallel
Strand 4
A
172 175parallel
Strand 5
A
317 319parallel
Strand 6
A
313 314anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
119 123anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 116first strand
Strand 2
A
93 100anti-parallel
Strand 3
A
227 230parallel
Strand 4
A
234 241anti-parallel
Strand 5
A
246 254anti-parallel
Strand 6
A
198 210anti-parallel
Strand 7
A
295 303anti-parallel
Strand 8
A
266 270anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
158 162anti-parallel
Strand 3
A
167 170anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 141first strand
Strand 2
B
37 41parallel
Strand 3
B
14 18parallel
Strand 4
B
172 175parallel
Strand 5
B
317 319parallel
Strand 6
B
313 314anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
119 123anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 116first strand
Strand 2
B
93 100anti-parallel
Strand 3
B
227 230parallel
Strand 4
B
234 241anti-parallel
Strand 5
B
246 254anti-parallel
Strand 6
B
198 210anti-parallel
Strand 7
B
295 303anti-parallel
Strand 8
B
266 270anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 150first strand
Strand 2
B
158 162anti-parallel
Strand 3
B
167 170anti-parallel
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