Analysis of interatomic Contacts of Structural Units in PDB entry:
6NF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NF0 entry

There is 1 chain in PDB entry 6NF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 120GLU 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6NF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
122 126Right-handed 310
Helix 2
AA2
A
152 159Right-handed alpha
Helix 3
AA3
A
166 170Right-handed 310
Helix 4
AA4
A
171 187Right-handed alpha
Helix 5
AA5
A
202 210Right-handed alpha
Helix 6
AA6
A
222 227Right-handed 310
Helix 7
AA7
A
293 312Right-handed alpha
Helix 8
AA8
A
331 340Right-handed alpha
Helix 9
AA9
A
348 352Right-handed 310
Helix 10
AB1
A
396 401Right-handed alpha
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There are 3 sheets in PDB entry 6NF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
386 392anti-parallel
Strand 3
A
417 423anti-parallel
Strand 4
A
143 149anti-parallel
Strand 5
A
190 194parallel
Strand 6
A
235 241anti-parallel
Strand 7
A
212 218anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 257first strand
Strand 2
A
260 273anti-parallel
Strand 3
A
279 286anti-parallel
Strand 4
A
319 324parallel
Strand 5
A
377 382anti-parallel
Strand 6
A
344 346anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 367first strand
Strand 2
A
370 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il