Analysis of interatomic Contacts of Structural Units in PDB entry:
6NF1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NF1 entry

There is 1 chain in PDB entry 6NF1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLY 565
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 6NF1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
29 38Right-handed alpha
Helix 3
AA3
A
40 51Right-handed alpha
Helix 4
AA4
A
56 60Right-handed 310
Helix 5
AA5
A
67 85Right-handed alpha
Helix 6
AA6
A
95 101Right-handed alpha
Helix 7
AA7
A
104 117Right-handed alpha
Helix 8
AA8
A
118 123Right-handed alpha
Helix 9
AA9
A
144 149Right-handed alpha
Helix 10
AB1
A
157 161Right-handed 310
Helix 11
AB2
A
167 179Right-handed alpha
Helix 12
AB3
A
190 220Right-handed alpha
Helix 13
AB4
A
220 225Right-handed alpha
Helix 14
AB5
A
229 238Right-handed alpha
Helix 15
AB6
A
239 260Right-handed alpha
Helix 16
AB7
A
265 277Right-handed alpha
Helix 17
AB8
A
279 301Right-handed alpha
Helix 18
AB9
A
301 317Right-handed alpha
Helix 19
AC1
A
321 326Right-handed alpha
Helix 20
AC2
A
327 346Right-handed alpha
Helix 21
AC3
A
349 389Right-handed alpha
Helix 22
AC4
A
396 400Right-handed 310
Helix 23
AC5
A
488 507Right-handed alpha
Helix 24
AC6
A
512 516Right-handed 310
Helix 25
AC7
A
554 561Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 6NF1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
440 448parallel
Strand 3
A
430 437anti-parallel
Strand 4
A
420 427anti-parallel
Strand 5
A
403 412anti-parallel
Strand 6
A
481 486anti-parallel
Strand 7
A
469 475anti-parallel
Strand 8
A
452 456anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 521first strand
Strand 2
A
543 546anti-parallel
Strand 3
A
552 553anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il