Analysis of interatomic Contacts of Structural Units in PDB entry:
6NFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NFD entry

There is 1 chain in PDB entry 6NFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 20ARG 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 6NFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 37Right-handed alpha
Helix 2
AA2
A
67 82Right-handed alpha
Helix 3
AA3
A
94 98Right-handed 310
Helix 4
AA4
A
104 108Right-handed 310
Helix 5
AA5
A
115 125Right-handed alpha
Helix 6
AA6
A
127 136Right-handed alpha
Helix 7
AA7
A
139 151Right-handed alpha
Helix 8
AA8
A
163 167Right-handed 310
Helix 9
AA9
A
178 192Right-handed alpha
Helix 10
AB1
A
196 209Right-handed alpha
Helix 11
AB2
A
216 221Right-handed 310
Helix 12
AB3
A
265 283Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6NFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
39 46anti-parallel
Strand 3
A
253 260anti-parallel
Strand 4
A
239 246anti-parallel
Strand 5
A
226 233anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
176 177anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
113 114anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il