Analysis of interatomic Contacts of Structural Units in PDB entry:
6NFE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NFE entry

There are 2 chains in PDB entry 6NFE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2VAL 305
B
 SER 2VAL 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 6NFE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
62 80Right-handed alpha
Helix 3
AA3
A
100 104Right-handed 310
Helix 4
AA4
A
108 120Right-handed alpha
Helix 5
AA5
A
132 139Right-handed 310
Helix 6
AA6
A
148 159Right-handed alpha
Helix 7
AA7
A
170 172Right-handed 310
Helix 8
AA8
A
173 183Right-handed alpha
Helix 9
AA9
A
226 239Right-handed alpha
Helix 10
AB1
A
256 263Right-handed alpha
Helix 11
AB2
A
278 283Right-handed alpha
Helix 12
AB3
A
292 304Right-handed alpha
Helix 13
AB4
B
12 24Right-handed alpha
Helix 14
AB5
B
62 80Right-handed alpha
Helix 15
AB6
B
100 104Right-handed 310
Helix 16
AB7
B
108 120Right-handed alpha
Helix 17
AB8
B
132 139Right-handed 310
Helix 18
AB9
B
148 159Right-handed alpha
Helix 19
AC1
B
170 172Right-handed 310
Helix 20
AC2
B
173 184Right-handed alpha
Helix 21
AC3
B
226 239Right-handed alpha
Helix 22
AC4
B
256 263Right-handed alpha
Helix 23
AC5
B
278 283Right-handed alpha
Helix 24
AC6
B
292 304Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6NFE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
52 56parallel
Strand 3
A
84 89parallel
Strand 4
A
124 128parallel
Strand 5
A
143 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
40 44anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
188 195anti-parallel
Strand 3
A
164 168parallel
Strand 4
A
215 223parallel
Strand 5
A
243 251parallel
Strand 6
A
268 272parallel
Strand 7
A
287 290parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
52 56parallel
Strand 3
B
84 88parallel
Strand 4
B
124 128parallel
Strand 5
B
143 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
40 44anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
188 192anti-parallel
Strand 3
B
164 168parallel
Strand 4
B
215 223parallel
Strand 5
B
243 251parallel
Strand 6
B
269 272parallel
Strand 7
B
287 290parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il