Analysis of interatomic Contacts of Structural Units in PDB entry:
6NFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NFF entry

There is 1 chain in PDB entry 6NFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LYS 793
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6NFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
29 33Right-handed 310
Helix 3
AA3
A
34 47Right-handed alpha
Helix 4
AA4
A
52 60Right-handed alpha
Helix 5
AA5
A
71 77Right-handed alpha
Helix 6
AA6
A
83 95Right-handed alpha
Helix 7
AA7
A
107 115Right-handed alpha
Helix 8
AA8
A
125 138Right-handed alpha
Helix 9
AA9
A
146 154Right-handed alpha
Helix 10
AB1
A
155 161Right-handed 310
Helix 11
AB2
A
178 182Right-handed 310
Helix 12
AB3
A
211 217Right-handed 310
Helix 13
AB4
A
236 240Right-handed 310
Helix 14
AB5
A
249 253Right-handed 310
Helix 15
AB6
A
286 294Right-handed alpha
Helix 16
AB7
A
318 333Right-handed alpha
Helix 17
AB8
A
363 375Right-handed alpha
Helix 18
AB9
A
392 396Right-handed alpha
Helix 19
AC1
A
412 420Right-handed alpha
Helix 20
AC2
A
421 425Right-handed 310
Helix 21
AC3
A
426 449Right-handed alpha
Helix 22
AC4
A
456 461Right-handed alpha
Helix 23
AC5
A
462 471Right-handed 310
Helix 24
AC6
A
488 499Right-handed alpha
Helix 25
AC7
A
524 539Right-handed alpha
Helix 26
AC8
A
543 547Right-handed 310
Helix 27
AC9
A
569 573Right-handed 310
Helix 28
AD1
A
603 610Right-handed alpha
Helix 29
AD2
A
612 623Right-handed alpha
Helix 30
AD3
A
624 629Right-handed alpha
Helix 31
AD4
A
722 724Right-handed 310
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There are 9 sheets in PDB entry 6NFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
69 70anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
172 173anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
183 190anti-parallel
Strand 3
A
338 339anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
183 190anti-parallel
Strand 3
A
203 210anti-parallel
Strand 4
A
298 302anti-parallel
Strand 5
A
220 226parallel
Strand 6
A
353 359parallel
Strand 7
A
380 386parallel
Strand 8
A
474 480parallel
Strand 9
A
505 510parallel
Strand 10
A
551 554parallel
Strand 11
A
562 565anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 398first strand
Strand 2
A
401 402anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 587first strand
Strand 2
A
574 580anti-parallel
Strand 3
A
777 793anti-parallel
Strand 4
A
643 657anti-parallel
Strand 5
A
739 744anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 600first strand
Strand 2
A
777 793anti-parallel
Strand 3
A
643 657anti-parallel
Strand 4
A
748 752anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 635first strand
Strand 2
A
757 763anti-parallel
Strand 3
A
663 674anti-parallel
Strand 4
A
709 720anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 690first strand
Strand 2
A
697 702anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il