Analysis of interatomic Contacts of Structural Units in PDB entry:
6NFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NFX entry

There is 1 chain in PDB entry 6NFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 141SER 603
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6NFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
142 151Right-handed alpha
Helix 2
AA2
A
156 160Right-handed 310
Helix 3
AA3
A
165 169Right-handed 310
Helix 4
AA4
A
233 239Right-handed alpha
Helix 5
AA5
A
245 249Right-handed 310
Helix 6
AA6
A
254 264Right-handed alpha
Helix 7
AA7
A
272 281Right-handed alpha
Helix 8
AA8
A
342 348Right-handed alpha
Helix 9
AA9
A
367 371Right-handed 310
Helix 10
AB1
A
444 449Right-handed alpha
Helix 11
AB2
A
465 474Right-handed alpha
Helix 12
AB3
A
479 484Right-handed 310
Helix 13
AB4
A
530 534Right-handed 310
Helix 14
AB5
A
548 554Right-handed alpha
Helix 15
AB6
A
589 598Right-handed alpha
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There are 7 sheets in PDB entry 6NFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 181first strand
Strand 2
A
192 201anti-parallel
Strand 3
A
204 209anti-parallel
Strand 4
A
220 223anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 332first strand
Strand 2
A
314 319anti-parallel
Strand 3
A
298 311anti-parallel
Strand 4
A
350 351parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 332first strand
Strand 2
A
314 319anti-parallel
Strand 3
A
298 311anti-parallel
Strand 4
A
289 295anti-parallel
Strand 5
A
364 365parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 434first strand
Strand 2
A
414 419anti-parallel
Strand 3
A
397 409anti-parallel
Strand 4
A
389 394anti-parallel
Strand 5
A
440 441anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 434first strand
Strand 2
A
414 419anti-parallel
Strand 3
A
397 409anti-parallel
Strand 4
A
453 454parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 538first strand
Strand 2
A
521 526anti-parallel
Strand 3
A
509 518anti-parallel
Strand 4
A
497 501anti-parallel
Strand 5
A
544 545anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 538first strand
Strand 2
A
521 526anti-parallel
Strand 3
A
509 518anti-parallel
Strand 4
A
557 558parallel
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