Analysis of interatomic Contacts of Structural Units in PDB entry:
6NFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NFZ entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 6NFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7ALA 164
A
 LEU 166LEU 170
A
 PHE 172LYS 292
B
 ASP 5LEU 170
B
 PHE 172LYS 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 6NFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
61 67Right-handed alpha
Helix 3
AA3
A
98 107Right-handed alpha
Helix 4
AA4
A
110 131Right-handed alpha
Helix 5
AA5
A
139 141Right-handed 310
Helix 6
AA6
A
175 179Right-handed 310
Helix 7
AA7
A
180 185Right-handed alpha
Helix 8
AA8
A
194 211Right-handed alpha
Helix 9
AA9
A
219 227Right-handed alpha
Helix 10
AB1
A
244 255Right-handed alpha
Helix 11
AB2
A
258 262Right-handed 310
Helix 12
AB3
A
264 269Right-handed alpha
Helix 13
AB4
A
281 292Right-handed alpha
Helix 14
AB5
B
12 15Right-handed 310
Helix 15
AB6
B
60 68Right-handed alpha
Helix 16
AB7
B
98 107Right-handed alpha
Helix 17
AB8
B
110 131Right-handed alpha
Helix 18
AB9
B
139 141Right-handed 310
Helix 19
AC1
B
175 179Right-handed 310
Helix 20
AC2
B
180 185Right-handed alpha
Helix 21
AC3
B
185 190Right-handed alpha
Helix 22
AC4
B
195 211Right-handed alpha
Helix 23
AC5
B
219 229Right-handed alpha
Helix 24
AC6
B
244 255Right-handed alpha
Helix 25
AC7
B
264 269Right-handed alpha
Helix 26
AC8
B
271 276Right-handed alpha
Helix 27
AC9
B
281 290Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6NFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
31 35anti-parallel
Strand 3
A
42 47anti-parallel
Strand 4
A
88 92anti-parallel
Strand 5
A
77 80anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
160 161anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
151 153anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 22first strand
Strand 2
B
30 36anti-parallel
Strand 3
B
42 49anti-parallel
Strand 4
B
86 91anti-parallel
Strand 5
B
77 83anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
160 161anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 145first strand
Strand 2
B
151 153anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il