Analysis of interatomic Contacts of Structural Units in PDB entry:
6NHV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NHV entry

There are 8 chains in PDB entry 6NHV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 64
A
 VAL 68HIS 232
N
 PRO 2VAL 119
O
 PRO 2VAL 119
R
 LYS 23ALA 319
S
 LYS 23GLY 165
T
 LYS 23GLY 165
X
 PRO 2VAL 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6NHV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed 310
Helix 2
AA2
A
56 61Right-handed 310
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
75 81Right-handed 310
Helix 5
AA5
A
82 87Right-handed alpha
Helix 6
AA6
A
156 159Right-handed 310
Helix 7
AA7
N
17 31Right-handed alpha
Helix 8
AA8
N
73 89Right-handed alpha
Helix 9
AA9
O
17 31Right-handed alpha
Helix 10
AB1
O
73 89Right-handed alpha
Helix 11
AB2
R
24 45Right-handed alpha
Helix 12
AB3
R
49 72Right-handed alpha
Helix 13
AB4
R
80 98Right-handed alpha
Helix 14
AB5
R
110 137Right-handed alpha
Helix 15
AB6
R
139 175Right-handed alpha
Helix 16
AB7
R
176 186Right-handed alpha
Helix 17
AB8
R
199 208Right-handed alpha
Helix 18
AB9
R
209 220Right-handed alpha
Helix 19
AC1
R
232 240Right-handed alpha
Helix 20
AC2
R
242 252Right-handed alpha
Helix 21
AC3
R
265 274Right-handed alpha
Helix 22
AC4
R
275 285Right-handed alpha
Helix 23
AC5
R
298 307Right-handed alpha
Helix 24
AC6
R
308 318Right-handed alpha
Helix 25
AC7
S
24 45Right-handed alpha
Helix 26
AC8
S
49 72Right-handed alpha
Helix 27
AC9
S
80 98Right-handed alpha
Helix 28
AD1
S
109 137Right-handed alpha
Helix 29
AD2
S
139 165Right-handed alpha
Helix 30
AD3
T
24 45Right-handed alpha
Helix 31
AD4
T
49 72Right-handed alpha
Helix 32
AD5
T
80 98Right-handed alpha
Helix 33
AD6
T
110 137Right-handed alpha
Helix 34
AD7
T
139 165Right-handed alpha
Helix 35
AD8
X
17 31Right-handed alpha
Helix 36
AD9
X
73 89Right-handed alpha
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There are 7 sheets in PDB entry 6NHV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 22first strand
Strand 2
A
25 36anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
217 227anti-parallel
Strand 5
A
199 208anti-parallel
Strand 6
A
148 155anti-parallel
Strand 7
A
160 170anti-parallel
Strand 8
A
176 187anti-parallel
Strand 9
A
92 100anti-parallel
Strand 10
A
105 115anti-parallel
Strand 11
A
118 128anti-parallel
Strand 12
A
11 22parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
49 52first strand
Strand 2
N
41 46anti-parallel
Strand 3
N
3 8parallel
Strand 4
N
61 69anti-parallel
Strand 5
N
100 109parallel
Strand 6
X
115 119anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
13 14first strand
Strand 2
N
92 94anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
49 52first strand
Strand 2
X
41 46anti-parallel
Strand 3
X
3 8parallel
Strand 4
X
61 69anti-parallel
Strand 5
X
100 109parallel
Strand 6
O
115 119anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
115 119first strand
Strand 2
O
100 109anti-parallel
Strand 3
O
61 69parallel
Strand 4
O
3 8anti-parallel
Strand 5
O
41 46parallel
Strand 6
X
49 52anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
13 14first strand
Strand 2
O
92 94anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
13 14first strand
Strand 2
X
92 94anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il