Analysis of interatomic Contacts of Structural Units in PDB entry:
6NIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NIB entry

There is 1 chain in PDB entry 6NIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12ILE 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6NIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 39Right-handed 310
Helix 2
AA2
A
40 56Right-handed alpha
Helix 3
AA3
A
65 67Right-handed 310
Helix 4
AA4
A
68 76Right-handed alpha
Helix 5
AA5
A
91 96Right-handed alpha
Helix 6
AA6
A
136 151Right-handed alpha
Helix 7
AA7
A
162 164Right-handed 310
Helix 8
AA8
A
178 182Right-handed alpha
Helix 9
AA9
A
191 204Right-handed alpha
Helix 10
AB1
A
224 227Right-handed 310
Helix 11
AB2
A
248 261Right-handed alpha
Helix 12
AB3
A
285 291Right-handed alpha
Helix 13
AB4
A
328 343Right-handed alpha
Helix 14
AB5
A
354 359Right-handed alpha
Helix 15
AB6
A
363 367Right-handed alpha
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There are 5 sheets in PDB entry 6NIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
59 64parallel
Strand 3
A
22 27parallel
Strand 4
A
368 372anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
115 121anti-parallel
Strand 3
A
154 160parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
173 177anti-parallel
Strand 3
A
207 211parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 233first strand
Strand 2
A
236 241anti-parallel
Strand 3
A
272 277parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
320 324anti-parallel
Strand 3
A
347 351parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il