Analysis of interatomic Contacts of Structural Units in PDB entry:
6NID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NID entry

There are 6 chains in PDB entry 6NID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 486ARG 572
B
 MET 485ARG 572
C
 GLY 486TYR 571
D
 ASP 1472VAL 1477
E
 LYS 1473VAL 1477
F
 LYS 1473VAL 1477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6NID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
522 528Right-handed alpha
Helix 2
AA2
A
548 559Right-handed alpha
Helix 3
AA3
B
522 528Right-handed alpha
Helix 4
AA4
B
548 559Right-handed alpha
Helix 5
AA5
C
522 528Right-handed alpha
Helix 6
AA6
C
545 547Right-handed 310
Helix 7
AA7
C
548 559Right-handed alpha
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There are 6 sheets in PDB entry 6NID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 495first strand
Strand 2
A
561 568anti-parallel
Strand 3
A
535 539anti-parallel
Strand 4
A
542 543anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 495first strand
Strand 2
A
561 568anti-parallel
Strand 3
A
535 539anti-parallel
Strand 4
A
513 518anti-parallel
Strand 5
A
503 507anti-parallel
Strand 6
E
1475 1476anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 495first strand
Strand 2
B
561 568anti-parallel
Strand 3
B
535 539anti-parallel
Strand 4
B
542 543anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 495first strand
Strand 2
B
561 568anti-parallel
Strand 3
B
535 539anti-parallel
Strand 4
B
513 518anti-parallel
Strand 5
B
503 507anti-parallel
Strand 6
D
1475 1477anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
489 495first strand
Strand 2
C
561 568anti-parallel
Strand 3
C
535 539anti-parallel
Strand 4
C
542 543anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
513 518first strand
Strand 2
C
503 507anti-parallel
Strand 3
F
1475 1476anti-parallel
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