Analysis of interatomic Contacts of Structural Units in PDB entry:
6NIE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NIE entry

There are 4 chains in PDB entry 6NIE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 8	LYS 251
B	LEU 8	LYS 251
C	LYS 9	ASP 252
D	LEU 8	LYS 251

There are 43 helices in PDB entry 6NIE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	31	Right-handed alpha
Helix 2	AA2	A	36	39	Right-handed 310
Helix 3	AA3	A	40	59	Right-handed alpha
Helix 4	AA4	A	68	70	Right-handed 310
Helix 5	AA5	A	80	88	Right-handed alpha
Helix 6	AA6	A	88	96	Right-handed alpha
Helix 7	AA7	A	97	109	Right-handed alpha
Helix 8	AA8	A	117	120	Right-handed 310
Helix 9	AA9	A	153	157	Right-handed 310
Helix 10	AB1	A	174	182	Right-handed alpha
Helix 11	AB2	A	224	228	Right-handed 310
Helix 12	AB3	B	16	31	Right-handed alpha
Helix 13	AB4	B	36	39	Right-handed 310
Helix 14	AB5	B	40	59	Right-handed alpha
Helix 15	AB6	B	68	70	Right-handed 310
Helix 16	AB7	B	80	88	Right-handed alpha
Helix 17	AB8	B	88	96	Right-handed alpha
Helix 18	AB9	B	97	109	Right-handed alpha
Helix 19	AC1	B	117	120	Right-handed 310
Helix 20	AC2	B	153	157	Right-handed 310
Helix 21	AC3	B	174	182	Right-handed alpha
Helix 22	AC4	B	224	228	Right-handed 310
Helix 23	AC5	C	16	31	Right-handed alpha
Helix 24	AC6	C	36	39	Right-handed 310
Helix 25	AC7	C	40	59	Right-handed alpha
Helix 26	AC8	C	68	70	Right-handed 310
Helix 27	AC9	C	80	88	Right-handed alpha
Helix 28	AD1	C	88	96	Right-handed alpha
Helix 29	AD2	C	97	109	Right-handed alpha
Helix 30	AD3	C	153	157	Right-handed 310
Helix 31	AD4	C	174	182	Right-handed alpha
Helix 32	AD5	C	224	228	Right-handed 310
Helix 33	AD6	D	16	31	Right-handed alpha
Helix 34	AD7	D	36	39	Right-handed 310
Helix 35	AD8	D	40	59	Right-handed alpha
Helix 36	AD9	D	68	70	Right-handed 310
Helix 37	AE1	D	80	88	Right-handed alpha
Helix 38	AE2	D	88	96	Right-handed alpha
Helix 39	AE3	D	97	109	Right-handed alpha
Helix 40	AE4	D	117	120	Right-handed 310
Helix 41	AE5	D	153	157	Right-handed 310
Helix 42	AE6	D	174	182	Right-handed alpha
Helix 43	AE7	D	224	228	Right-handed 310

There are 12 sheets in PDB entry 6NIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	193	198	anti-parallel
Strand 3	A	143	150	anti-parallel
Strand 4	A	215	223	anti-parallel
Strand 5	A	122	127	anti-parallel
Strand 6	A	73	79	anti-parallel
Strand 7	A	133	134	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	215	223	anti-parallel
Strand 3	A	122	127	anti-parallel
Strand 4	A	73	79	anti-parallel
Strand 5	A	60	66	anti-parallel
Strand 6	A	247	249	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	187	first strand
Strand 2	A	160	163	anti-parallel
Strand 3	A	203	206	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	194	198	anti-parallel
Strand 3	B	143	150	anti-parallel
Strand 4	B	215	223	anti-parallel
Strand 5	B	122	127	anti-parallel
Strand 6	B	73	79	anti-parallel
Strand 7	B	133	134	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	215	223	anti-parallel
Strand 3	B	122	127	anti-parallel
Strand 4	B	73	79	anti-parallel
Strand 5	B	60	66	anti-parallel
Strand 6	B	247	249	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	187	first strand
Strand 2	B	160	163	anti-parallel
Strand 3	B	203	206	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	194	198	anti-parallel
Strand 3	C	143	150	anti-parallel
Strand 4	C	215	223	anti-parallel
Strand 5	C	122	127	anti-parallel
Strand 6	C	73	79	anti-parallel
Strand 7	C	133	134	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	215	223	anti-parallel
Strand 3	C	122	127	anti-parallel
Strand 4	C	73	79	anti-parallel
Strand 5	C	60	66	anti-parallel
Strand 6	C	247	249	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	160	163	anti-parallel
Strand 3	C	203	206	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	34	first strand
Strand 2	D	194	198	anti-parallel
Strand 3	D	143	150	anti-parallel
Strand 4	D	215	223	anti-parallel
Strand 5	D	122	127	anti-parallel
Strand 6	D	73	79	anti-parallel
Strand 7	D	133	134	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	215	223	anti-parallel
Strand 3	D	122	127	anti-parallel
Strand 4	D	73	79	anti-parallel
Strand 5	D	60	66	anti-parallel
Strand 6	D	247	249	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	187	first strand
Strand 2	D	160	163	anti-parallel
Strand 3	D	203	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NIE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NIE