Analysis of interatomic Contacts of Structural Units in PDB entry:
6NIG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NIG entry

There are 4 chains in PDB entry 6NIG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 27	PRO 575
B	SER 27	PRO 575
C	SER 27	PRO 575
D	SER 27	PRO 575

There are 40 helices in PDB entry 6NIG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	116	121	Right-handed alpha
Helix 2	AA2	A	212	221	Right-handed alpha
Helix 3	AA3	A	263	275	Right-handed alpha
Helix 4	AA4	A	328	336	Right-handed 310
Helix 5	AA5	A	352	359	Right-handed alpha
Helix 6	AA6	A	373	381	Right-handed alpha
Helix 7	AA7	A	401	410	Right-handed alpha
Helix 8	AA8	A	494	498	Right-handed 310
Helix 9	AA9	A	517	522	Right-handed alpha
Helix 10	AB1	A	538	552	Right-handed alpha
Helix 11	AB2	A	568	572	Right-handed 310
Helix 12	AB3	B	212	221	Right-handed alpha
Helix 13	AB4	B	263	275	Right-handed alpha
Helix 14	AB5	B	328	336	Right-handed 310
Helix 15	AB6	B	352	359	Right-handed alpha
Helix 16	AB7	B	373	381	Right-handed alpha
Helix 17	AB8	B	401	410	Right-handed alpha
Helix 18	AB9	B	494	498	Right-handed 310
Helix 19	AC1	B	517	522	Right-handed alpha
Helix 20	AC2	B	538	552	Right-handed alpha
Helix 21	AC3	B	568	572	Right-handed 310
Helix 22	AC4	C	166	171	Right-handed 310
Helix 23	AC5	C	212	221	Right-handed alpha
Helix 24	AC6	C	263	275	Right-handed alpha
Helix 25	AC7	C	328	336	Right-handed 310
Helix 26	AC8	C	352	359	Right-handed alpha
Helix 27	AC9	C	373	381	Right-handed alpha
Helix 28	AD1	C	401	409	Right-handed alpha
Helix 29	AD2	C	494	498	Right-handed 310
Helix 30	AD3	C	538	552	Right-handed alpha
Helix 31	AD4	D	212	221	Right-handed alpha
Helix 32	AD5	D	263	275	Right-handed alpha
Helix 33	AD6	D	328	336	Right-handed 310
Helix 34	AD7	D	352	359	Right-handed alpha
Helix 35	AD8	D	376	381	Right-handed alpha
Helix 36	AD9	D	401	409	Right-handed alpha
Helix 37	AE1	D	494	498	Right-handed 310
Helix 38	AE2	D	517	522	Right-handed alpha
Helix 39	AE3	D	538	552	Right-handed alpha
Helix 40	AE4	D	568	572	Right-handed 310

There are 15 sheets in PDB entry 6NIG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 23 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	35	37	anti-parallel
Strand 3	A	56	58	parallel
Strand 4	A	80	82	parallel
Strand 5	A	104	106	parallel
Strand 6	A	128	130	parallel
Strand 7	A	153	158	parallel
Strand 8	A	175	183	parallel
Strand 9	A	199	206	parallel
Strand 10	A	224	230	parallel
Strand 11	A	253	257	parallel
Strand 12	A	281	285	parallel
Strand 13	A	311	315	parallel
Strand 14	A	340	344	parallel
Strand 15	A	364	366	parallel
Strand 16	A	391	393	parallel
Strand 17	A	417	419	parallel
Strand 18	A	440	442	parallel
Strand 19	A	461	463	parallel
Strand 20	A	481	483	parallel
Strand 21	A	503	505	parallel
Strand 22	A	527	529	parallel
Strand 23	A	556	557	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	90	91	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	188	189	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	262	first strand
Strand 2	A	288	290	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	56	58	parallel

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There are 20 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	104	106	parallel
Strand 3	B	128	130	parallel
Strand 4	B	153	157	parallel
Strand 5	B	175	182	parallel
Strand 6	B	199	206	parallel
Strand 7	B	224	230	parallel
Strand 8	B	253	257	parallel
Strand 9	B	281	285	parallel
Strand 10	B	311	315	parallel
Strand 11	B	340	344	parallel
Strand 12	B	364	366	parallel
Strand 13	B	391	393	parallel
Strand 14	B	417	419	parallel
Strand 15	B	440	442	parallel
Strand 16	B	461	463	parallel
Strand 17	B	481	483	parallel
Strand 18	B	503	505	parallel
Strand 19	B	527	529	parallel
Strand 20	B	556	557	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	188	189	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	B	260	262	parallel
Strand 3	B	288	290	parallel

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There are 23 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	35	37	anti-parallel
Strand 3	C	56	58	parallel
Strand 4	C	80	82	parallel
Strand 5	C	104	106	parallel
Strand 6	C	128	130	parallel
Strand 7	C	153	158	parallel
Strand 8	C	175	183	parallel
Strand 9	C	199	206	parallel
Strand 10	C	224	230	parallel
Strand 11	C	253	257	parallel
Strand 12	C	281	285	parallel
Strand 13	C	311	315	parallel
Strand 14	C	340	344	parallel
Strand 15	C	364	366	parallel
Strand 16	C	391	393	parallel
Strand 17	C	417	419	parallel
Strand 18	C	440	442	parallel
Strand 19	C	461	463	parallel
Strand 20	C	481	483	parallel
Strand 21	C	503	505	parallel
Strand 22	C	527	529	parallel
Strand 23	C	556	557	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	188	189	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	262	first strand
Strand 2	C	288	290	parallel

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There are 23 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	30	first strand
Strand 2	D	35	37	anti-parallel
Strand 3	D	56	58	parallel
Strand 4	D	80	82	parallel
Strand 5	D	104	106	parallel
Strand 6	D	128	130	parallel
Strand 7	D	153	158	parallel
Strand 8	D	175	183	parallel
Strand 9	D	199	206	parallel
Strand 10	D	224	230	parallel
Strand 11	D	253	257	parallel
Strand 12	D	281	285	parallel
Strand 13	D	311	315	parallel
Strand 14	D	340	344	parallel
Strand 15	D	364	366	parallel
Strand 16	D	391	393	parallel
Strand 17	D	417	419	parallel
Strand 18	D	440	442	parallel
Strand 19	D	461	463	parallel
Strand 20	D	481	483	parallel
Strand 21	D	503	505	parallel
Strand 22	D	527	529	parallel
Strand 23	D	556	557	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	90	91	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	165	first strand
Strand 2	D	188	189	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	262	first strand
Strand 2	D	288	290	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NIG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NIG