Analysis of interatomic Contacts of Structural Units in PDB entry:
6NII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NII entry

There are 2 chains in PDB entry 6NII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 CYS 13ALA 195
A
 CYS 13ALA 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6NII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
13 27Right-handed alpha
Helix 2
AA2
B
45 50Right-handed 310
Helix 3
AA3
B
53 55Right-handed 310
Helix 4
AA4
B
65 74Right-handed alpha
Helix 5
AA5
B
127 132Right-handed alpha
Helix 6
AA6
B
155 172Right-handed alpha
Helix 7
AA7
B
173 184Right-handed alpha
Helix 8
AA8
A
14 27Right-handed alpha
Helix 9
AA9
A
45 50Right-handed 310
Helix 10
AB1
A
53 55Right-handed 310
Helix 11
AB2
A
66 76Right-handed alpha
Helix 12
AB3
A
102 105Right-handed 310
Helix 13
AB4
A
127 132Right-handed alpha
Helix 14
AB5
A
155 172Right-handed alpha
Helix 15
AB6
A
173 184Right-handed alpha
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There are 4 sheets in PDB entry 6NII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
191 194anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
147 153anti-parallel
Strand 3
B
82 88anti-parallel
Strand 4
B
93 101anti-parallel
Strand 5
B
106 110anti-parallel
Strand 6
B
116 118anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
191 194anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
148 153anti-parallel
Strand 3
A
81 87anti-parallel
Strand 4
A
94 101anti-parallel
Strand 5
A
106 112anti-parallel
Strand 6
A
115 118anti-parallel
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