Analysis of interatomic Contacts of Structural Units in PDB entry:
6NIJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NIJ entry

There are 8 chains in PDB entry 6NIJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	SER 118
L	VAL 2	ARG 113
A	ALA 31	GLN 507
B	VAL 518	ASP 664
C	ALA 31	GLN 507
D	VAL 518	ASP 664
E	ALA 31	GLN 507
F	VAL 518	ASP 664

There are 56 helices in PDB entry 6NIJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	25	32	Right-handed 310
Helix 2	AA2	H	83	87	Right-handed 310
Helix 3	AA3	L	84	88	Right-handed 310
Helix 4	AA4	A	59	63	Right-handed 310
Helix 5	AA5	A	67	73	Right-handed alpha
Helix 6	AA6	A	99	117	Right-handed alpha
Helix 7	AA7	A	122	127	Right-handed 310
Helix 8	AA8	A	334	353	Right-handed alpha
Helix 9	AA9	A	368	373	Right-handed alpha
Helix 10	AB1	A	387	392	Right-handed alpha
Helix 11	AB2	A	474	484	Right-handed alpha
Helix 12	AB3	B	524	528	Right-handed 310
Helix 13	AB4	B	529	534	Right-handed alpha
Helix 14	AB5	B	538	543	Right-handed 310
Helix 15	AB6	B	544	549	Right-handed alpha
Helix 16	AB7	B	549	554	Right-handed alpha
Helix 17	AB8	B	569	596	Right-handed alpha
Helix 18	AB9	B	618	625	Right-handed alpha
Helix 19	AC1	B	627	636	Right-handed alpha
Helix 20	AC2	B	638	662	Right-handed alpha
Helix 21	AC3	C	61	66	Right-handed alpha
Helix 22	AC4	C	96	98	Right-handed 310
Helix 23	AC5	C	99	116	Right-handed alpha
Helix 24	AC6	C	122	126	Right-handed 310
Helix 25	AC7	C	334	352	Right-handed alpha
Helix 26	AC8	C	368	373	Right-handed alpha
Helix 27	AC9	C	387	391	Right-handed 310
Helix 28	AD1	C	474	484	Right-handed alpha
Helix 29	AD2	D	524	528	Right-handed 310
Helix 30	AD3	D	531	535	Right-handed 310
Helix 31	AD4	D	536	543	Right-handed alpha
Helix 32	AD5	D	548	553	Right-handed alpha
Helix 33	AD6	D	570	596	Right-handed alpha
Helix 34	AD7	D	611	613	Right-handed 310
Helix 35	AD8	D	618	625	Right-handed alpha
Helix 36	AD9	D	627	635	Right-handed alpha
Helix 37	AE1	D	638	649	Right-handed alpha
Helix 38	AE2	D	651	662	Right-handed alpha
Helix 39	AE3	E	98	117	Right-handed alpha
Helix 40	AE4	E	123	127	Right-handed 310
Helix 41	AE5	E	325	328	Right-handed 310
Helix 42	AE6	E	334	354	Right-handed alpha
Helix 43	AE7	E	368	372	Right-handed 310
Helix 44	AE8	E	386	391	Right-handed alpha
Helix 45	AE9	E	474	484	Right-handed alpha
Helix 46	AF1	F	523	528	Right-handed 310
Helix 47	AF2	F	531	535	Right-handed 310
Helix 48	AF3	F	536	546	Right-handed alpha
Helix 49	AF4	F	547	552	Right-handed alpha
Helix 50	AF5	F	569	597	Right-handed alpha
Helix 51	AF6	F	619	624	Right-handed alpha
Helix 52	AF7	F	627	632	Right-handed alpha
Helix 53	AF8	F	633	634	Right-handed 310
Helix 54	AF9	F	635	637	Right-handed 310
Helix 55	AG1	F	638	649	Right-handed alpha
Helix 56	AG2	F	653	664	Right-handed alpha

There are 39 sheets in PDB entry 6NIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	88	92	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	54	56	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	23	first strand
Strand 2	H	77	82	anti-parallel
Strand 3	H	65	72	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	100	first strand
Strand 2	H	100	102	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	107	111	parallel
Strand 3	L	89	93	anti-parallel
Strand 4	L	40	43	anti-parallel
Strand 5	L	50	51	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	29	first strand
Strand 2	L	67	80	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	498	500	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	227	anti-parallel
Strand 4	A	243	245	anti-parallel
Strand 5	A	83	85	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	216	218	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	154	162	anti-parallel
Strand 3	A	169	177	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	191	193	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	201	first strand
Strand 2	A	433	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	285	292	anti-parallel
Strand 3	A	449	451	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	322	first strand
Strand 2	A	295	312	anti-parallel
Strand 3	A	329	333	anti-parallel
Strand 4	A	414	421	anti-parallel
Strand 5	A	381	385	anti-parallel
Strand 6	A	374	378	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	322	first strand
Strand 2	A	295	312	anti-parallel
Strand 3	A	441	446	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	467	471	parallel
Strand 3	A	454	456	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	495	500	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	47	first strand
Strand 2	C	486	492	anti-parallel
Strand 3	C	223	227	anti-parallel
Strand 4	C	243	245	anti-parallel
Strand 5	C	83	85	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	54	56	parallel
Strand 3	C	216	217	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	236	239	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	190	193	anti-parallel
Strand 3	C	181	184	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	161	first strand
Strand 2	C	170	177	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	434	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	444	456	anti-parallel
Strand 3	C	284	297	anti-parallel
Strand 4	C	271	273	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	444	456	anti-parallel
Strand 3	C	468	470	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	306	first strand
Strand 2	C	318	323	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	333	first strand
Strand 2	C	414	420	anti-parallel
Strand 3	C	381	385	anti-parallel
Strand 4	C	374	378	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	360	first strand
Strand 2	C	465	466	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	606	609	first strand
Strand 2	E	35	36	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	47	first strand
Strand 2	E	486	492	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	53	56	parallel
Strand 3	E	216	218	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	176	first strand
Strand 2	E	155	161	anti-parallel
Strand 3	E	129	133	anti-parallel
Strand 4	E	190	192	anti-parallel
Strand 5	E	182	183	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	444	455	anti-parallel
Strand 3	E	284	297	anti-parallel
Strand 4	E	330	333	anti-parallel
Strand 5	E	414	417	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	297	anti-parallel
Strand 3	E	444	455	anti-parallel
Strand 4	E	469	470	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	312	first strand
Strand 2	E	315	320	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	359	360	first strand
Strand 2	E	465	466	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	378	first strand
Strand 2	E	381	384	anti-parallel
Strand 3	E	419	421	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	425	first strand
Strand 2	E	433	435	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NIJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NIJ