Analysis of interatomic Contacts of Structural Units in PDB entry:
6NIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NIP entry

There are 5 chains in PDB entry 6NIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1LYS 214
B
 GLN 1THR 210
Z
 ILE 1SER 403
E
 ILE 1SER 403
H
 GLN 1LYS 81
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6NIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 64Right-handed 310
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
A
156 158Right-handed 310
Helix 4
AA4
A
187 190Right-handed 310
Helix 5
AA5
B
79 83Right-handed 310
Helix 6
AA6
B
122 127Right-handed alpha
Helix 7
AA7
B
182 188Right-handed alpha
Helix 8
AA8
Z
82 87Right-handed 310
Helix 9
AA9
Z
148 152Right-handed 310
Helix 10
AB1
Z
181 183Right-handed 310
Helix 11
AB2
Z
215 220Right-handed alpha
Helix 12
AB3
Z
238 241Right-handed 310
Helix 13
AB4
Z
261 269Right-handed alpha
Helix 14
AB5
E
82 87Right-handed 310
Helix 15
AB6
E
148 152Right-handed 310
Helix 16
AB7
E
181 183Right-handed 310
Helix 17
AB8
E
192 195Right-handed 310
Helix 18
AB9
E
215 220Right-handed alpha
Helix 19
AC1
E
238 241Right-handed 310
Helix 20
AC2
E
261 269Right-handed alpha
Helix 21
AC3
H
28 32Right-handed 310
Helix 22
AC4
H
83 87Right-handed 310
Helix 23
AC5
H
156 158Right-handed 310
Helix 24
AC6
H
187 189Right-handed 310
Helix 25
AC7
L
79 83Right-handed 310
Helix 26
AC8
L
122 127Right-handed alpha
Helix 27
AC9
L
182 188Right-handed alpha
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There are 39 sheets in PDB entry 6NIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
77 82anti-parallel
Strand 4
A
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
107 112parallel
Strand 3
A
88 95anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
57 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
107 112parallel
Strand 3
A
88 95anti-parallel
Strand 4
A
102 103anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
135 145anti-parallel
Strand 3
A
176 185anti-parallel
Strand 4
A
163 165anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
135 145anti-parallel
Strand 3
A
176 185anti-parallel
Strand 4
A
169 170anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
194 200anti-parallel
Strand 3
A
205 211anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
102 106parallel
Strand 3
B
84 92anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
45 48anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
102 106parallel
Strand 3
B
84 92anti-parallel
Strand 4
B
95 98anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 24first strand
Strand 2
B
70 75anti-parallel
Strand 3
B
62 66anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 119first strand
Strand 2
B
131 140anti-parallel
Strand 3
B
173 181anti-parallel
Strand 4
B
160 162anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 119first strand
Strand 2
B
131 140anti-parallel
Strand 3
B
173 181anti-parallel
Strand 4
B
166 167anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 150first strand
Strand 2
B
192 198anti-parallel
Strand 3
B
201 207anti-parallel
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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
9 13first strand
Strand 2
Z
30 35parallel
Strand 3
Z
38 50anti-parallel
Strand 4
Z
281 284anti-parallel
Strand 5
Z
273 278anti-parallel
Strand 6
Z
210 214anti-parallel
Strand 7
Z
201 205anti-parallel
Strand 8
Z
109 129anti-parallel
Strand 9
Z
136 143first strand
Strand 10
Z
165 169anti-parallel
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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
90 99first strand
Strand 2
Z
109 129anti-parallel
Strand 3
Z
201 205anti-parallel
Strand 4
Z
210 214anti-parallel
Strand 5
Z
273 278anti-parallel
Strand 6
Z
281 284anti-parallel
Strand 7
Z
38 50anti-parallel
Strand 8
Z
54 72first strand
Strand 9
Z
225 227anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
20 25first strand
Strand 2
Z
289 294anti-parallel
Strand 3
Z
185 190anti-parallel
Strand 4
Z
175 179anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
243 248first strand
Strand 2
Z
252 257anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
312 320first strand
Strand 2
Z
326 332anti-parallel
Strand 3
Z
372 379anti-parallel
Strand 4
Z
357 358anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
339 340first strand
Strand 2
Z
364 365anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
343 346first strand
Strand 2
Z
383 389anti-parallel
Strand 3
Z
396 402anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 13first strand
Strand 2
E
30 35parallel
Strand 3
E
38 50anti-parallel
Strand 4
E
136 143anti-parallel
Strand 5
E
165 169anti-parallel
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There are 10 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 13first strand
Strand 2
E
30 35parallel
Strand 3
E
38 50anti-parallel
Strand 4
E
281 284anti-parallel
Strand 5
E
273 278anti-parallel
Strand 6
E
210 214anti-parallel
Strand 7
E
201 205anti-parallel
Strand 8
E
120 129anti-parallel
Strand 9
E
54 64anti-parallel
Strand 10
E
225 227anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 25first strand
Strand 2
E
289 294anti-parallel
Strand 3
E
185 191anti-parallel
Strand 4
E
175 179anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
69 72first strand
Strand 2
E
109 118anti-parallel
Strand 3
E
90 99anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
243 248first strand
Strand 2
E
252 257anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
312 320first strand
Strand 2
E
326 332anti-parallel
Strand 3
E
372 379anti-parallel
Strand 4
E
357 358anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
339 340first strand
Strand 2
E
364 365anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 355first strand
Strand 2
E
343 346anti-parallel
Strand 3
E
385 389anti-parallel
Strand 4
E
396 400anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 13first strand
Strand 2
H
107 112parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 13first strand
Strand 2
H
107 112parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
102 103anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
120 124first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
176 185anti-parallel
Strand 4
H
163 165anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
120 124first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
176 185anti-parallel
Strand 4
H
169 170anti-parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
151 154first strand
Strand 2
H
194 200anti-parallel
Strand 3
H
205 211anti-parallel
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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
102 106parallel
Strand 3
L
84 92anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 48anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
102 106parallel
Strand 3
L
84 92anti-parallel
Strand 4
L
95 98anti-parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 24first strand
Strand 2
L
70 75anti-parallel
Strand 3
L
62 66anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 119first strand
Strand 2
L
131 140anti-parallel
Strand 3
L
173 181anti-parallel
Strand 4
L
160 162anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 119first strand
Strand 2
L
131 140anti-parallel
Strand 3
L
173 181anti-parallel
Strand 4
L
166 167anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
146 151first strand
Strand 2
L
192 198anti-parallel
Strand 3
L
201 207anti-parallel
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