Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NJ0 entry

There is 1 chain in PDB entry 6NJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2GLN 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6NJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 16Right-handed alpha
Helix 2
AA2
A
30 47Right-handed alpha
Helix 3
AA3
A
62 75Right-handed alpha
Helix 4
AA4
A
87 95Right-handed alpha
Helix 5
AA5
A
96 98Right-handed 310
Helix 6
AA6
A
156 170Right-handed alpha
Helix 7
AA7
A
186 200Right-handed alpha
Helix 8
AA8
A
210 215Right-handed alpha
Helix 9
AA9
A
224 234Right-handed alpha
Helix 10
AB1
A
251 261Right-handed alpha
Helix 11
AB2
A
272 275Right-handed 310
Helix 12
AB3
A
352 354Right-handed 310
Helix 13
AB4
A
363 373Right-handed alpha
Helix 14
AB5
A
409 414Right-handed 310
Helix 15
AB6
A
416 420Right-handed 310
Helix 16
AB7
A
428 432Right-handed 310
Helix 17
AB8
A
440 449Right-handed alpha
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There are 6 sheets in PDB entry 6NJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
19 23anti-parallel
Strand 3
A
202 205parallel
Strand 4
A
177 179parallel
Strand 5
A
220 223parallel
Strand 6
A
242 245parallel
Strand 7
A
265 271parallel
Strand 8
A
276 282anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
54 58parallel
Strand 3
A
102 104parallel
Strand 4
A
116 117parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 141first strand
Strand 2
A
151 155anti-parallel
Strand 3
A
315 318anti-parallel
Strand 4
A
321 323anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 301first strand
Strand 2
A
304 308anti-parallel
Strand 3
A
332 341anti-parallel
Strand 4
A
344 350anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 357first strand
Strand 2
A
360 362anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 387first strand
Strand 2
A
391 400anti-parallel
Strand 3
A
424 426parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il