Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NJ4 entry

There are 2 chains in PDB entry 6NJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLY 232
A
 GLY 234HIS 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 6NJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 18Right-handed 310
Helix 2
AA2
A
19 24Right-handed 310
Helix 3
AA3
A
126 128Right-handed 310
Helix 4
AA4
A
129 134Right-handed alpha
Helix 5
AA5
A
153 163Right-handed alpha
Helix 6
AA6
A
164 166Right-handed 310
Helix 7
AA7
A
179 184Right-handed 310
Helix 8
AA8
A
218 226Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6NJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
107 108parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
256 257parallel
Strand 3
A
190 195anti-parallel
Strand 4
A
206 211anti-parallel
Strand 5
A
140 149parallel
Strand 6
A
115 123anti-parallel
Strand 7
A
87 96anti-parallel
Strand 8
A
65 69anti-parallel
Strand 9
A
55 60anti-parallel
Strand 10
A
172 174anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
77 80anti-parallel
Strand 3
A
87 96anti-parallel
Strand 4
A
115 123anti-parallel
Strand 5
A
140 149anti-parallel
Strand 6
A
215 217parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il