Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NJ8 entry

There are 7 chains in PDB entry 6NJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 6	GLU 282
B	LEU 6	GLU 282
C	LEU 6	GLU 282
D	LEU 6	GLU 282
E	THR 3	GLN 9
F	THR 3	GLN 9
G	THR 3	GLN 9

There are 33 helices in PDB entry 6NJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	28	Right-handed alpha
Helix 2	AA2	A	97	105	Right-handed alpha
Helix 3	AA3	A	110	131	Right-handed alpha
Helix 4	AA4	A	160	173	Right-handed alpha
Helix 5	AA5	A	185	193	Right-handed alpha
Helix 6	AA6	A	207	212	Right-handed alpha
Helix 7	AA7	A	270	272	Right-handed 310
Helix 8	AA8	B	13	27	Right-handed alpha
Helix 9	AA9	B	33	37	Right-handed 310
Helix 10	AB1	B	97	104	Right-handed alpha
Helix 11	AB2	B	112	128	Right-handed alpha
Helix 12	AB3	B	158	173	Right-handed alpha
Helix 13	AB4	B	185	192	Right-handed alpha
Helix 14	AB5	B	270	274	Right-handed 310
Helix 15	AB6	C	13	30	Right-handed alpha
Helix 16	AB7	C	31	32	Right-handed 310
Helix 17	AB8	C	33	37	Right-handed 310
Helix 18	AB9	C	97	104	Right-handed alpha
Helix 19	AC1	C	112	130	Right-handed alpha
Helix 20	AC2	C	160	173	Right-handed alpha
Helix 21	AC3	C	185	190	Right-handed alpha
Helix 22	AC4	C	191	193	Right-handed 310
Helix 23	AC5	C	202	212	Right-handed alpha
Helix 24	AC6	C	270	272	Right-handed 310
Helix 25	AC7	D	13	30	Right-handed alpha
Helix 26	AC8	D	33	37	Right-handed 310
Helix 27	AC9	D	94	101	Right-handed alpha
Helix 28	AD1	D	110	131	Right-handed alpha
Helix 29	AD2	D	158	173	Right-handed alpha
Helix 30	AD3	D	185	190	Right-handed alpha
Helix 31	AD4	D	191	194	Right-handed 310
Helix 32	AD5	D	202	212	Right-handed alpha
Helix 33	AD6	D	270	274	Right-handed 310

There are 15 sheets in PDB entry 6NJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	236	248	parallel
Strand 3	A	257	268	anti-parallel
Strand 4	A	87	92	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	54	first strand
Strand 2	A	79	83	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	274	277	parallel
Strand 3	A	226	230	anti-parallel
Strand 4	A	180	184	anti-parallel
Strand 5	A	215	217	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	54	first strand
Strand 2	B	79	83	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	93	first strand
Strand 2	B	256	264	anti-parallel
Strand 3	B	240	248	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	276	277	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	180	184	parallel
Strand 3	B	226	230	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	267	268	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	236	247	parallel
Strand 3	C	256	268	anti-parallel
Strand 4	C	88	93	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	54	first strand
Strand 2	C	79	83	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	137	138	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	274	277	parallel
Strand 3	C	226	230	anti-parallel
Strand 4	C	180	184	anti-parallel
Strand 5	C	215	217	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	236	248	parallel
Strand 3	D	256	268	anti-parallel
Strand 4	D	86	93	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	54	first strand
Strand 2	D	79	83	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	275	277	parallel
Strand 3	D	226	230	anti-parallel
Strand 4	D	180	184	anti-parallel
Strand 5	D	216	217	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJ8