Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NJE entry

There is 1 chain in PDB entry 6NJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 35ILE 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6NJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 108Right-handed alpha
Helix 2
AA2
A
111 116Right-handed alpha
Helix 3
AA3
A
132 138Right-handed alpha
Helix 4
AA4
A
145 162Right-handed alpha
Helix 5
AA5
A
217 230Right-handed alpha
Helix 6
AA6
A
277 281Right-handed 310
Helix 7
AA7
A
298 314Right-handed alpha
Helix 8
AA8
A
319 322Right-handed 310
Helix 9
AA9
A
323 329Right-handed alpha
Helix 10
AB1
A
348 350Right-handed 310
Helix 11
AB2
A
351 363Right-handed alpha
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There are 4 sheets in PDB entry 6NJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
45 50parallel
Strand 3
A
338 345parallel
Strand 4
A
121 126parallel
Strand 5
A
265 274parallel
Strand 6
A
247 258anti-parallel
Strand 7
A
168 180anti-parallel
Strand 8
A
183 186anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
45 50parallel
Strand 3
A
338 345parallel
Strand 4
A
121 126parallel
Strand 5
A
265 274parallel
Strand 6
A
247 258anti-parallel
Strand 7
A
168 180anti-parallel
Strand 8
A
213 215anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
85 89anti-parallel
Strand 3
A
365 369anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
205 206anti-parallel
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