Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NJK entry

There are 2 chains in PDB entry 6NJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 26GLN 387
B
 SER 26LEU 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6NJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 47Right-handed alpha
Helix 2
AA2
A
89 104Right-handed alpha
Helix 3
AA3
A
112 117Right-handed alpha
Helix 4
AA4
A
118 121Right-handed 310
Helix 5
AA5
A
124 128Right-handed 310
Helix 6
AA6
A
129 130Right-handed 310
Helix 7
AA7
A
131 136Right-handed alpha
Helix 8
AA8
A
151 160Right-handed alpha
Helix 9
AA9
A
173 189Right-handed alpha
Helix 10
AB1
A
191 199Right-handed alpha
Helix 11
AB2
A
199 204Right-handed alpha
Helix 12
AB3
A
214 221Right-handed 310
Helix 13
AB4
A
240 246Right-handed alpha
Helix 14
AB5
A
250 262Right-handed alpha
Helix 15
AB6
A
268 279Right-handed alpha
Helix 16
AB7
A
302 310Right-handed alpha
Helix 17
AB8
A
312 317Right-handed alpha
Helix 18
AB9
A
353 355Right-handed 310
Helix 19
AC1
A
368 386Right-handed alpha
Helix 20
AC2
B
28 47Right-handed alpha
Helix 21
AC3
B
89 104Right-handed alpha
Helix 22
AC4
B
112 117Right-handed alpha
Helix 23
AC5
B
118 121Right-handed 310
Helix 24
AC6
B
124 128Right-handed 310
Helix 25
AC7
B
129 130Right-handed 310
Helix 26
AC8
B
131 136Right-handed alpha
Helix 27
AC9
B
151 161Right-handed alpha
Helix 28
AD1
B
173 189Right-handed alpha
Helix 29
AD2
B
191 199Right-handed alpha
Helix 30
AD3
B
199 205Right-handed alpha
Helix 31
AD4
B
214 221Right-handed 310
Helix 32
AD5
B
240 246Right-handed alpha
Helix 33
AD6
B
250 262Right-handed alpha
Helix 34
AD7
B
268 279Right-handed alpha
Helix 35
AD8
B
302 310Right-handed alpha
Helix 36
AD9
B
311 317Right-handed alpha
Helix 37
AE1
B
353 355Right-handed 310
Helix 38
AE2
B
368 385Right-handed alpha
Helix 39
AE3
B
386 388Right-handed 310
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There are 7 sheets in PDB entry 6NJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
61 71anti-parallel
Strand 3
A
51 58anti-parallel
Strand 4
A
357 363anti-parallel
Strand 5
A
346 352anti-parallel
Strand 6
A
334 341anti-parallel
Strand 7
A
295 298anti-parallel
Strand 8
A
289 290anti-parallel
Strand 9
A
281 284anti-parallel
Strand 10
A
322 328anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
248 249anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
232 233anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
B
61 71anti-parallel
Strand 3
B
51 58anti-parallel
Strand 4
B
357 363anti-parallel
Strand 5
B
346 352anti-parallel
Strand 6
B
334 341anti-parallel
Strand 7
B
295 298anti-parallel
Strand 8
B
289 290anti-parallel
Strand 9
B
281 284anti-parallel
Strand 10
B
322 328anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
248 249anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
319 320anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
232 233anti-parallel
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