Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NJO entry

There are 6 chains in PDB entry 6NJO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 35	ALA 446
B	GLU 35	ALA 446
C	GLU 35	ALA 446
D	TYR 34	ALA 446
E	GLU 35	ALA 446
F	GLU 35	ALA 446

There are 92 helices in PDB entry 6NJO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	158	164	Right-handed alpha
Helix 2	AA2	A	182	194	Right-handed alpha
Helix 3	AA3	A	207	216	Right-handed alpha
Helix 4	AA4	A	219	224	Right-handed alpha
Helix 5	AA5	A	236	257	Right-handed alpha
Helix 6	AA6	A	267	283	Right-handed alpha
Helix 7	AA7	A	292	304	Right-handed alpha
Helix 8	AA8	A	329	339	Right-handed alpha
Helix 9	AA9	A	347	352	Right-handed alpha
Helix 10	AB1	A	373	398	Right-handed alpha
Helix 11	AB2	A	407	416	Right-handed alpha
Helix 12	AB3	A	416	425	Right-handed alpha
Helix 13	AB4	A	433	445	Right-handed alpha
Helix 14	AB5	B	107	111	Right-handed 310
Helix 15	AB6	B	158	164	Right-handed alpha
Helix 16	AB7	B	182	194	Right-handed alpha
Helix 17	AB8	B	209	217	Right-handed alpha
Helix 18	AB9	B	219	224	Right-handed alpha
Helix 19	AC1	B	238	257	Right-handed alpha
Helix 20	AC2	B	267	282	Right-handed alpha
Helix 21	AC3	B	292	305	Right-handed alpha
Helix 22	AC4	B	329	337	Right-handed alpha
Helix 23	AC5	B	346	351	Right-handed alpha
Helix 24	AC6	B	367	372	Right-handed alpha
Helix 25	AC7	B	373	392	Right-handed alpha
Helix 26	AC8	B	394	399	Right-handed alpha
Helix 27	AC9	B	407	421	Right-handed alpha
Helix 28	AD1	B	433	446	Right-handed alpha
Helix 29	AD2	C	107	111	Right-handed 310
Helix 30	AD3	C	143	147	Right-handed 310
Helix 31	AD4	C	182	190	Right-handed alpha
Helix 32	AD5	C	209	214	Right-handed alpha
Helix 33	AD6	C	219	224	Right-handed alpha
Helix 34	AD7	C	236	242	Right-handed alpha
Helix 35	AD8	C	243	257	Right-handed alpha
Helix 36	AD9	C	267	282	Right-handed alpha
Helix 37	AE1	C	292	297	Right-handed alpha
Helix 38	AE2	C	299	304	Right-handed alpha
Helix 39	AE3	C	329	337	Right-handed alpha
Helix 40	AE4	C	346	352	Right-handed alpha
Helix 41	AE5	C	367	372	Right-handed alpha
Helix 42	AE6	C	373	399	Right-handed alpha
Helix 43	AE7	C	409	416	Right-handed alpha
Helix 44	AE8	C	416	425	Right-handed alpha
Helix 45	AE9	C	433	446	Right-handed alpha
Helix 46	AF1	D	107	111	Right-handed 310
Helix 47	AF2	D	158	164	Right-handed alpha
Helix 48	AF3	D	182	194	Right-handed alpha
Helix 49	AF4	D	209	218	Right-handed alpha
Helix 50	AF5	D	219	224	Right-handed alpha
Helix 51	AF6	D	236	257	Right-handed alpha
Helix 52	AF7	D	268	282	Right-handed alpha
Helix 53	AF8	D	292	299	Right-handed alpha
Helix 54	AF9	D	299	304	Right-handed alpha
Helix 55	AG1	D	329	339	Right-handed alpha
Helix 56	AG2	D	346	351	Right-handed alpha
Helix 57	AG3	D	367	372	Right-handed alpha
Helix 58	AG4	D	373	394	Right-handed alpha
Helix 59	AG5	D	394	399	Right-handed alpha
Helix 60	AG6	D	407	416	Right-handed alpha
Helix 61	AG7	D	416	425	Right-handed alpha
Helix 62	AG8	D	433	446	Right-handed alpha
Helix 63	AG9	E	159	164	Right-handed alpha
Helix 64	AH1	E	182	193	Right-handed alpha
Helix 65	AH2	E	207	209	Right-handed 310
Helix 66	AH3	E	210	216	Right-handed alpha
Helix 67	AH4	E	236	257	Right-handed alpha
Helix 68	AH5	E	267	281	Right-handed alpha
Helix 69	AH6	E	292	303	Right-handed alpha
Helix 70	AH7	E	332	338	Right-handed alpha
Helix 71	AH8	E	346	351	Right-handed alpha
Helix 72	AH9	E	373	394	Right-handed alpha
Helix 73	AI1	E	394	399	Right-handed alpha
Helix 74	AI2	E	407	416	Right-handed alpha
Helix 75	AI3	E	416	425	Right-handed alpha
Helix 76	AI4	E	433	446	Right-handed alpha
Helix 77	AI5	F	107	111	Right-handed 310
Helix 78	AI6	F	143	147	Right-handed 310
Helix 79	AI7	F	158	165	Right-handed alpha
Helix 80	AI8	F	182	192	Right-handed alpha
Helix 81	AI9	F	209	216	Right-handed alpha
Helix 82	AJ1	F	219	224	Right-handed alpha
Helix 83	AJ2	F	238	257	Right-handed alpha
Helix 84	AJ3	F	267	283	Right-handed alpha
Helix 85	AJ4	F	294	304	Right-handed alpha
Helix 86	AJ5	F	331	337	Right-handed alpha
Helix 87	AJ6	F	348	352	Right-handed 310
Helix 88	AJ7	F	373	388	Right-handed alpha
Helix 89	AJ8	F	390	399	Right-handed alpha
Helix 90	AJ9	F	410	416	Right-handed alpha
Helix 91	AK1	F	417	424	Right-handed alpha
Helix 92	AK2	F	433	443	Right-handed alpha

There are 20 sheets in PDB entry 6NJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	46	48	anti-parallel
Strand 3	A	78	81	anti-parallel
Strand 4	A	67	72	anti-parallel
Strand 5	A	58	60	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	133	136	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	226	230	parallel
Strand 3	A	198	203	parallel
Strand 4	A	260	266	parallel
Strand 5	A	313	321	parallel
Strand 6	A	172	177	parallel
Strand 7	A	342	344	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	41	first strand
Strand 2	B	46	49	anti-parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	67	72	anti-parallel
Strand 5	B	58	61	anti-parallel
Strand 6	B	95	97	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	133	136	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	226	232	parallel
Strand 3	B	198	206	parallel
Strand 4	B	260	266	parallel
Strand 5	B	313	321	parallel
Strand 6	B	172	177	parallel
Strand 7	B	343	344	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	167	168	anti-parallel

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There are 14 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	74	first strand
Strand 2	C	58	61	anti-parallel
Strand 3	C	94	98	anti-parallel
Strand 4	C	36	41	anti-parallel
Strand 5	C	46	49	anti-parallel
Strand 6	C	77	82	anti-parallel
Strand 7	C	67	74	anti-parallel
Strand 8	D	36	42	anti-parallel
Strand 9	D	93	99	anti-parallel
Strand 10	D	58	61	anti-parallel
Strand 11	D	67	73	anti-parallel
Strand 12	D	77	82	anti-parallel
Strand 13	D	45	49	anti-parallel
Strand 14	D	36	42	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	106	first strand
Strand 2	C	133	136	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	115	first strand
Strand 2	C	226	229	parallel
Strand 3	C	198	202	parallel
Strand 4	C	260	265	parallel
Strand 5	C	313	321	parallel
Strand 6	C	172	177	parallel
Strand 7	C	341	344	parallel
Strand 8	C	364	365	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	167	168	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	106	first strand
Strand 2	D	133	136	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	115	first strand
Strand 2	D	227	232	parallel
Strand 3	D	198	206	parallel
Strand 4	D	260	266	parallel
Strand 5	D	313	321	parallel
Strand 6	D	172	177	parallel
Strand 7	D	341	344	parallel
Strand 8	D	364	365	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	41	first strand
Strand 2	E	46	49	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel
Strand 5	E	58	61	anti-parallel
Strand 6	E	93	97	anti-parallel
Strand 7	E	36	41	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	106	first strand
Strand 2	E	133	136	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	115	first strand
Strand 2	E	226	232	parallel
Strand 3	E	199	206	parallel
Strand 4	E	261	266	parallel
Strand 5	E	313	321	parallel
Strand 6	E	307	308	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	115	first strand
Strand 2	E	226	232	parallel
Strand 3	E	199	206	parallel
Strand 4	E	261	266	parallel
Strand 5	E	313	321	parallel
Strand 6	E	172	177	parallel
Strand 7	E	342	344	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	41	first strand
Strand 2	F	46	49	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	73	anti-parallel
Strand 5	F	58	61	anti-parallel
Strand 6	F	95	96	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	106	first strand
Strand 2	F	133	136	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	115	first strand
Strand 2	F	226	229	parallel
Strand 3	F	198	202	parallel
Strand 4	F	261	265	parallel
Strand 5	F	314	320	parallel
Strand 6	F	173	177	parallel
Strand 7	F	342	345	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NJO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJO