Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NJP entry

There are 7 chains in PDB entry 6NJP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 35	ALA 446
B	GLU 35	ALA 446
C	GLU 35	ALA 446
D	TYR 34	ALA 446
E	GLU 35	ALA 446
F	GLU 35	ALA 446
G	HIS 0	HIS 122

There are 93 helices in PDB entry 6NJP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	158	163	Right-handed alpha
Helix 2	AA2	A	182	194	Right-handed alpha
Helix 3	AA3	A	207	216	Right-handed alpha
Helix 4	AA4	A	219	224	Right-handed alpha
Helix 5	AA5	A	236	257	Right-handed alpha
Helix 6	AA6	A	267	283	Right-handed alpha
Helix 7	AA7	A	292	304	Right-handed alpha
Helix 8	AA8	A	329	339	Right-handed alpha
Helix 9	AA9	A	347	352	Right-handed alpha
Helix 10	AB1	A	373	398	Right-handed alpha
Helix 11	AB2	A	407	425	Right-handed alpha
Helix 12	AB3	A	433	446	Right-handed alpha
Helix 13	AB4	B	107	111	Right-handed 310
Helix 14	AB5	B	158	164	Right-handed alpha
Helix 15	AB6	B	182	194	Right-handed alpha
Helix 16	AB7	B	209	217	Right-handed alpha
Helix 17	AB8	B	219	224	Right-handed alpha
Helix 18	AB9	B	238	257	Right-handed alpha
Helix 19	AC1	B	267	282	Right-handed alpha
Helix 20	AC2	B	292	305	Right-handed alpha
Helix 21	AC3	B	329	337	Right-handed alpha
Helix 22	AC4	B	346	351	Right-handed alpha
Helix 23	AC5	B	367	372	Right-handed alpha
Helix 24	AC6	B	373	399	Right-handed alpha
Helix 25	AC7	B	407	424	Right-handed alpha
Helix 26	AC8	B	433	446	Right-handed alpha
Helix 27	AC9	C	107	111	Right-handed 310
Helix 28	AD1	C	143	147	Right-handed 310
Helix 29	AD2	C	158	162	Right-handed 310
Helix 30	AD3	C	182	192	Right-handed alpha
Helix 31	AD4	C	209	218	Right-handed alpha
Helix 32	AD5	C	219	224	Right-handed alpha
Helix 33	AD6	C	236	242	Right-handed alpha
Helix 34	AD7	C	243	256	Right-handed alpha
Helix 35	AD8	C	267	282	Right-handed alpha
Helix 36	AD9	C	292	297	Right-handed alpha
Helix 37	AE1	C	299	304	Right-handed alpha
Helix 38	AE2	C	329	339	Right-handed alpha
Helix 39	AE3	C	347	352	Right-handed alpha
Helix 40	AE4	C	367	372	Right-handed alpha
Helix 41	AE5	C	373	400	Right-handed alpha
Helix 42	AE6	C	407	416	Right-handed alpha
Helix 43	AE7	C	416	425	Right-handed alpha
Helix 44	AE8	C	433	446	Right-handed alpha
Helix 45	AE9	D	158	164	Right-handed alpha
Helix 46	AF1	D	182	194	Right-handed alpha
Helix 47	AF2	D	207	209	Right-handed 310
Helix 48	AF3	D	210	217	Right-handed alpha
Helix 49	AF4	D	219	224	Right-handed alpha
Helix 50	AF5	D	236	257	Right-handed alpha
Helix 51	AF6	D	267	282	Right-handed alpha
Helix 52	AF7	D	292	304	Right-handed alpha
Helix 53	AF8	D	329	339	Right-handed alpha
Helix 54	AF9	D	346	350	Right-handed 310
Helix 55	AG1	D	373	394	Right-handed alpha
Helix 56	AG2	D	395	397	Right-handed 310
Helix 57	AG3	D	407	416	Right-handed alpha
Helix 58	AG4	D	416	425	Right-handed alpha
Helix 59	AG5	D	433	446	Right-handed alpha
Helix 60	AG6	E	159	164	Right-handed alpha
Helix 61	AG7	E	182	193	Right-handed alpha
Helix 62	AG8	E	207	209	Right-handed 310
Helix 63	AG9	E	210	216	Right-handed alpha
Helix 64	AH1	E	219	224	Right-handed alpha
Helix 65	AH2	E	236	257	Right-handed alpha
Helix 66	AH3	E	267	281	Right-handed alpha
Helix 67	AH4	E	292	303	Right-handed alpha
Helix 68	AH5	E	332	338	Right-handed alpha
Helix 69	AH6	E	346	351	Right-handed alpha
Helix 70	AH7	E	373	394	Right-handed alpha
Helix 71	AH8	E	394	399	Right-handed alpha
Helix 72	AH9	E	407	416	Right-handed alpha
Helix 73	AI1	E	416	424	Right-handed alpha
Helix 74	AI2	E	433	446	Right-handed alpha
Helix 75	AI3	F	107	111	Right-handed 310
Helix 76	AI4	F	143	147	Right-handed 310
Helix 77	AI5	F	158	165	Right-handed alpha
Helix 78	AI6	F	182	192	Right-handed alpha
Helix 79	AI7	F	209	216	Right-handed alpha
Helix 80	AI8	F	219	224	Right-handed alpha
Helix 81	AI9	F	236	256	Right-handed alpha
Helix 82	AJ1	F	267	283	Right-handed alpha
Helix 83	AJ2	F	292	305	Right-handed alpha
Helix 84	AJ3	F	331	337	Right-handed alpha
Helix 85	AJ4	F	346	351	Right-handed alpha
Helix 86	AJ5	F	359	363	Right-handed 310
Helix 87	AJ6	F	373	389	Right-handed alpha
Helix 88	AJ7	F	390	399	Right-handed alpha
Helix 89	AJ8	F	409	416	Right-handed alpha
Helix 90	AJ9	F	417	424	Right-handed alpha
Helix 91	AK1	F	433	443	Right-handed alpha
Helix 92	AK2	G	1	26	Right-handed alpha
Helix 93	AK3	G	91	114	Right-handed alpha

There are 24 sheets in PDB entry 6NJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	41	first strand
Strand 2	A	46	49	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	66	72	anti-parallel
Strand 5	A	58	61	anti-parallel
Strand 6	A	95	97	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	133	136	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	226	230	parallel
Strand 3	A	198	203	parallel
Strand 4	A	260	266	parallel
Strand 5	A	313	321	parallel
Strand 6	A	173	177	parallel
Strand 7	A	342	344	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	41	first strand
Strand 2	B	46	49	anti-parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	66	72	anti-parallel
Strand 5	B	58	61	anti-parallel
Strand 6	B	95	97	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	133	136	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	226	232	parallel
Strand 3	B	198	206	parallel
Strand 4	B	261	266	parallel
Strand 5	B	313	321	parallel
Strand 6	B	307	308	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	226	232	parallel
Strand 3	B	198	206	parallel
Strand 4	B	261	266	parallel
Strand 5	B	313	321	parallel
Strand 6	B	172	177	parallel
Strand 7	B	342	344	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	167	168	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	41	first strand
Strand 2	C	46	49	anti-parallel
Strand 3	C	78	82	anti-parallel
Strand 4	C	66	73	anti-parallel
Strand 5	C	58	61	anti-parallel
Strand 6	C	94	97	anti-parallel
Strand 7	C	36	41	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	106	first strand
Strand 2	C	133	136	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	115	first strand
Strand 2	C	226	229	parallel
Strand 3	C	198	202	parallel
Strand 4	C	260	265	parallel
Strand 5	C	313	321	parallel
Strand 6	C	173	177	parallel
Strand 7	C	341	344	parallel
Strand 8	C	364	365	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	167	168	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	40	first strand
Strand 2	D	46	49	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	73	anti-parallel
Strand 5	D	58	61	anti-parallel
Strand 6	D	93	99	anti-parallel
Strand 7	D	36	40	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	106	first strand
Strand 2	D	133	136	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	115	first strand
Strand 2	D	227	232	parallel
Strand 3	D	198	206	parallel
Strand 4	D	260	266	parallel
Strand 5	D	313	321	parallel
Strand 6	D	172	177	parallel
Strand 7	D	341	344	parallel
Strand 8	D	364	365	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	167	168	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	41	first strand
Strand 2	E	46	49	anti-parallel
Strand 3	E	78	82	anti-parallel
Strand 4	E	67	74	anti-parallel
Strand 5	E	58	60	anti-parallel
Strand 6	E	96	99	anti-parallel

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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	41	first strand
Strand 2	E	46	49	anti-parallel
Strand 3	E	78	82	anti-parallel
Strand 4	E	67	74	anti-parallel
Strand 5	F	37	41	anti-parallel
Strand 6	F	46	49	anti-parallel
Strand 7	F	77	82	anti-parallel
Strand 8	F	66	73	anti-parallel
Strand 9	F	58	61	anti-parallel
Strand 10	F	95	96	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	106	first strand
Strand 2	E	133	136	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	115	first strand
Strand 2	E	226	232	parallel
Strand 3	E	199	206	parallel
Strand 4	E	261	266	parallel
Strand 5	E	313	321	parallel
Strand 6	E	307	308	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	115	first strand
Strand 2	E	226	232	parallel
Strand 3	E	199	206	parallel
Strand 4	E	261	266	parallel
Strand 5	E	313	321	parallel
Strand 6	E	172	177	parallel
Strand 7	E	342	344	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	154	first strand
Strand 2	E	167	168	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	104	first strand
Strand 2	F	135	136	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	115	first strand
Strand 2	F	226	232	parallel
Strand 3	F	198	206	parallel
Strand 4	F	261	266	parallel
Strand 5	F	314	321	parallel
Strand 6	F	173	177	parallel
Strand 7	F	342	344	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NJP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJP