Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NJS entry

There is 1 chain in PDB entry 6NJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 136CYS 687
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6NJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
138 178Right-handed alpha
Helix 2
AA2
A
193 238Right-handed alpha
Helix 3
AA3
A
238 252Right-handed alpha
Helix 4
AA4
A
260 291Right-handed alpha
Helix 5
AA5
A
296 320Right-handed alpha
Helix 6
AA6
A
355 359Right-handed 310
Helix 7
AA7
A
431 435Right-handed 310
Helix 8
AA8
A
466 468Right-handed 310
Helix 9
AA9
A
469 484Right-handed alpha
Helix 10
AB1
A
501 514Right-handed alpha
Helix 11
AB2
A
521 534Right-handed alpha
Helix 12
AB3
A
545 550Right-handed alpha
Helix 13
AB4
A
560 575Right-handed alpha
Helix 14
AB5
A
576 583Right-handed alpha
Helix 15
AB6
A
590 601Right-handed alpha
Helix 16
AB7
A
641 646Right-handed alpha
Helix 17
AB8
A
649 657Right-handed alpha
Helix 18
AB9
A
679 684Right-handed alpha
Helix 19
AC1
A
685 687Right-handed 310
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There are 7 sheets in PDB entry 6NJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 328first strand
Strand 2
A
345 351anti-parallel
Strand 3
A
404 415anti-parallel
Strand 4
A
384 388anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 328first strand
Strand 2
A
345 351anti-parallel
Strand 3
A
404 415anti-parallel
Strand 4
A
395 396anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
462 464parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
363 368anti-parallel
Strand 3
A
439 447anti-parallel
Strand 4
A
450 457anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
543 544anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 636first strand
Strand 2
A
619 626anti-parallel
Strand 3
A
605 610anti-parallel
Strand 4
A
672 673parallel
Strand 5
A
677 678anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 660first strand
Strand 2
A
666 667anti-parallel
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