Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NJT entry

There are 2 chains in PDB entry 6NJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 19GLY 243
B
 GLY 18GLY 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6NJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 24Right-handed 310
Helix 2
AA2
A
56 61Right-handed alpha
Helix 3
AA3
A
78 82Right-handed 310
Helix 4
AA4
A
84 89Right-handed alpha
Helix 5
AA5
A
100 104Right-handed 310
Helix 6
AA6
A
107 114Right-handed alpha
Helix 7
AA7
A
115 118Right-handed 310
Helix 8
AA8
A
124 130Right-handed alpha
Helix 9
AA9
A
130 142Right-handed alpha
Helix 10
AB1
A
143 145Right-handed 310
Helix 11
AB2
A
215 220Right-handed 310
Helix 12
AB3
A
222 231Right-handed alpha
Helix 13
AB4
A
234 243Right-handed alpha
Helix 14
AB5
B
78 82Right-handed 310
Helix 15
AB6
B
84 89Right-handed alpha
Helix 16
AB7
B
100 104Right-handed 310
Helix 17
AB8
B
107 114Right-handed alpha
Helix 18
AB9
B
115 118Right-handed 310
Helix 19
AC1
B
124 130Right-handed alpha
Helix 20
AC2
B
130 142Right-handed alpha
Helix 21
AC3
B
143 145Right-handed 310
Helix 22
AC4
B
215 220Right-handed 310
Helix 23
AC5
B
222 231Right-handed alpha
Helix 24
AC6
B
234 242Right-handed alpha
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There are 6 sheets in PDB entry 6NJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
38 42anti-parallel
Strand 3
A
47 55anti-parallel
Strand 4
A
148 156anti-parallel
Strand 5
A
184 192anti-parallel
Strand 6
A
198 206anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
120 123anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
167 174anti-parallel
Strand 3
B
167 174anti-parallel
Strand 4
B
160 161anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
167 174anti-parallel
Strand 3
B
167 174anti-parallel
Strand 4
B
179 180anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
38 42anti-parallel
Strand 3
B
47 55anti-parallel
Strand 4
B
148 156anti-parallel
Strand 5
B
184 192anti-parallel
Strand 6
B
198 206anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
120 123anti-parallel
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