Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NJU entry

There are 5 chains in PDB entry 6NJU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 19	ARG 241
B	GLY 18	LEU 245
C	GLU 19	ALA 242
D	GLU 19	ALA 247
E	C 1	G 10

There are 48 helices in PDB entry 6NJU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	61	Right-handed alpha
Helix 2	AA2	A	78	82	Right-handed 310
Helix 3	AA3	A	84	89	Right-handed alpha
Helix 4	AA4	A	100	104	Right-handed 310
Helix 5	AA5	A	107	114	Right-handed alpha
Helix 6	AA6	A	115	118	Right-handed 310
Helix 7	AA7	A	124	130	Right-handed alpha
Helix 8	AA8	A	130	142	Right-handed alpha
Helix 9	AA9	A	143	145	Right-handed 310
Helix 10	AB1	A	215	220	Right-handed 310
Helix 11	AB2	A	222	231	Right-handed alpha
Helix 12	AB3	A	234	239	Right-handed alpha
Helix 13	AB4	B	56	61	Right-handed alpha
Helix 14	AB5	B	78	82	Right-handed 310
Helix 15	AB6	B	84	89	Right-handed alpha
Helix 16	AB7	B	100	104	Right-handed 310
Helix 17	AB8	B	107	114	Right-handed alpha
Helix 18	AB9	B	115	118	Right-handed 310
Helix 19	AC1	B	124	130	Right-handed alpha
Helix 20	AC2	B	130	142	Right-handed alpha
Helix 21	AC3	B	143	145	Right-handed 310
Helix 22	AC4	B	215	220	Right-handed 310
Helix 23	AC5	B	222	231	Right-handed alpha
Helix 24	AC6	B	234	242	Right-handed alpha
Helix 25	AC7	C	57	61	Right-handed 310
Helix 26	AC8	C	78	82	Right-handed 310
Helix 27	AC9	C	84	89	Right-handed alpha
Helix 28	AD1	C	100	105	Right-handed 310
Helix 29	AD2	C	107	114	Right-handed alpha
Helix 30	AD3	C	115	118	Right-handed 310
Helix 31	AD4	C	124	130	Right-handed alpha
Helix 32	AD5	C	130	142	Right-handed alpha
Helix 33	AD6	C	143	145	Right-handed 310
Helix 34	AD7	C	215	220	Right-handed 310
Helix 35	AD8	C	222	231	Right-handed alpha
Helix 36	AD9	C	234	239	Right-handed alpha
Helix 37	AE1	C	240	242	Right-handed 310
Helix 38	AE2	D	56	61	Right-handed alpha
Helix 39	AE3	D	78	82	Right-handed 310
Helix 40	AE4	D	84	89	Right-handed alpha
Helix 41	AE5	D	100	104	Right-handed 310
Helix 42	AE6	D	107	113	Right-handed alpha
Helix 43	AE7	D	114	118	Right-handed 310
Helix 44	AE8	D	124	129	Right-handed alpha
Helix 45	AE9	D	130	146	Right-handed alpha
Helix 46	AF1	D	215	220	Right-handed 310
Helix 47	AF2	D	222	231	Right-handed alpha
Helix 48	AF3	D	234	240	Right-handed alpha

There are 12 sheets in PDB entry 6NJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	38	42	anti-parallel
Strand 3	A	47	55	anti-parallel
Strand 4	A	148	156	anti-parallel
Strand 5	A	184	192	anti-parallel
Strand 6	A	198	206	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	120	123	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	161	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	B	167	174	anti-parallel
Strand 4	B	160	161	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	B	167	174	anti-parallel
Strand 4	B	179	180	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	38	42	anti-parallel
Strand 3	B	47	55	anti-parallel
Strand 4	B	148	156	anti-parallel
Strand 5	B	184	192	anti-parallel
Strand 6	B	198	206	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	120	123	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	34	first strand
Strand 2	C	37	42	anti-parallel
Strand 3	C	47	55	anti-parallel
Strand 4	C	148	156	anti-parallel
Strand 5	C	184	192	anti-parallel
Strand 6	C	198	206	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	97	first strand
Strand 2	C	120	123	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	161	first strand
Strand 2	C	167	174	anti-parallel
Strand 3	D	167	174	anti-parallel
Strand 4	D	160	161	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	167	174	anti-parallel
Strand 3	D	167	174	anti-parallel
Strand 4	D	179	180	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	38	42	anti-parallel
Strand 3	D	47	55	anti-parallel
Strand 4	D	148	156	anti-parallel
Strand 5	D	184	192	anti-parallel
Strand 6	D	198	206	anti-parallel
Strand 7	D	244	246	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	120	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NJU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJU