Analysis of interatomic Contacts of Structural Units in PDB entry:
6NK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NK0 entry

There are 4 chains in PDB entry 6NK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 27HIS 207
B
 GLY 27HIS 207
C
 TRP 2TYR 11
D
 TRP 2TYR 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6NK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 38Right-handed alpha
Helix 2
AA2
A
104 108Right-handed 310
Helix 3
AA3
A
135 139Right-handed 310
Helix 4
AA4
A
152 158Right-handed alpha
Helix 5
AA5
A
201 204Right-handed 310
Helix 6
AA6
B
35 38Right-handed 310
Helix 7
AA7
B
104 108Right-handed 310
Helix 8
AA8
B
135 139Right-handed 310
Helix 9
AA9
B
152 158Right-handed alpha
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There are 8 sheets in PDB entry 6NK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 33first strand
Strand 2
A
188 199anti-parallel
Strand 3
A
94 102anti-parallel
Strand 4
A
164 170anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 33first strand
Strand 2
A
188 199anti-parallel
Strand 3
A
64 70anti-parallel
Strand 4
A
53 57anti-parallel
Strand 5
C
9 10anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
79 82anti-parallel
Strand 3
A
177 184anti-parallel
Strand 4
A
86 87anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
79 82anti-parallel
Strand 3
A
177 184anti-parallel
Strand 4
A
119 126anti-parallel
Strand 5
A
140 145anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 33first strand
Strand 2
B
188 199anti-parallel
Strand 3
B
94 102anti-parallel
Strand 4
B
164 170anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 33first strand
Strand 2
B
188 199anti-parallel
Strand 3
B
64 70anti-parallel
Strand 4
B
53 57anti-parallel
Strand 5
D
9 10anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
79 82anti-parallel
Strand 3
B
177 184anti-parallel
Strand 4
B
86 87anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
79 82anti-parallel
Strand 3
B
177 184anti-parallel
Strand 4
B
119 126anti-parallel
Strand 5
B
140 145anti-parallel
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