Analysis of interatomic Contacts of Structural Units in PDB entry:
6NK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NK8 entry

There are 2 chains in PDB entry 6NK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 391ALA 594
B
 PHE 391ALA 594
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 6NK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
401 415Right-handed alpha
Helix 2
AA2
A
418 423Right-handed alpha
Helix 3
AA3
A
434 442Right-handed alpha
Helix 4
AA4
A
465 476Right-handed alpha
Helix 5
AA5
A
490 498Right-handed alpha
Helix 6
AA6
A
506 514Right-handed alpha
Helix 7
AA7
A
516 528Right-handed alpha
Helix 8
AA8
A
531 544Right-handed alpha
Helix 9
AA9
A
545 548Right-handed 310
Helix 10
AB1
A
549 561Right-handed alpha
Helix 11
AB2
A
561 571Right-handed alpha
Helix 12
AB3
A
572 573Right-handed 310
Helix 13
AB4
A
574 578Right-handed 310
Helix 14
AB5
A
579 594Right-handed alpha
Helix 15
AB6
B
401 415Right-handed alpha
Helix 16
AB7
B
418 423Right-handed alpha
Helix 17
AB8
B
434 442Right-handed alpha
Helix 18
AB9
B
464 476Right-handed alpha
Helix 19
AC1
B
491 498Right-handed alpha
Helix 20
AC2
B
506 514Right-handed alpha
Helix 21
AC3
B
516 528Right-handed alpha
Helix 22
AC4
B
531 544Right-handed alpha
Helix 23
AC5
B
545 548Right-handed 310
Helix 24
AC6
B
549 561Right-handed alpha
Helix 25
AC7
B
561 571Right-handed alpha
Helix 26
AC8
B
572 573Right-handed 310
Helix 27
AC9
B
574 578Right-handed 310
Helix 28
AD1
B
579 594Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6NK8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 428first strand
Strand 2
A
395 399parallel
Strand 3
A
450 454parallel
Strand 4
A
500 502parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 428first strand
Strand 2
B
395 399parallel
Strand 3
B
450 454parallel
Strand 4
B
500 502parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il