Analysis of interatomic Contacts of Structural Units in PDB entry:
6NKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NKD entry

There are 2 chains in PDB entry 6NKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLU 211
B
 THR 2GLU 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6NKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 15Right-handed alpha
Helix 2
AA2
A
24 38Right-handed alpha
Helix 3
AA3
A
52 60Right-handed alpha
Helix 4
AA4
A
62 72Right-handed alpha
Helix 5
AA5
A
80 95Right-handed alpha
Helix 6
AA6
A
97 123Right-handed alpha
Helix 7
AA7
A
143 158Right-handed alpha
Helix 8
AA8
A
159 161Right-handed 310
Helix 9
AA9
A
170 176Right-handed alpha
Helix 10
AB1
A
178 183Right-handed alpha
Helix 11
AB2
A
191 205Right-handed alpha
Helix 12
AB3
A
206 211Right-handed 310
Helix 13
AB4
B
10 15Right-handed alpha
Helix 14
AB5
B
24 38Right-handed alpha
Helix 15
AB6
B
52 60Right-handed alpha
Helix 16
AB7
B
62 71Right-handed alpha
Helix 17
AB8
B
80 95Right-handed alpha
Helix 18
AB9
B
102 123Right-handed alpha
Helix 19
AC1
B
143 158Right-handed alpha
Helix 20
AC2
B
159 161Right-handed 310
Helix 21
AC3
B
170 176Right-handed alpha
Helix 22
AC4
B
178 183Right-handed alpha
Helix 23
AC5
B
191 205Right-handed alpha
Helix 24
AC6
B
206 211Right-handed 310
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There are 2 sheets in PDB entry 6NKD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 47first strand
Strand 2
A
3 9parallel
Strand 3
A
74 77parallel
Strand 4
A
130 134parallel
Strand 5
A
166 169parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 47first strand
Strand 2
B
3 9parallel
Strand 3
B
74 77parallel
Strand 4
B
130 134parallel
Strand 5
B
166 169parallel
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