Analysis of interatomic Contacts of Structural Units in PDB entry:
6NKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NKE entry

There is 1 chain in PDB entry 6NKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6NKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 12Right-handed alpha
Helix 2
AA2
A
27 42Right-handed alpha
Helix 3
AA3
A
55 70Right-handed alpha
Helix 4
AA4
A
101 106Right-handed alpha
Helix 5
AA5
A
106 118Right-handed alpha
Helix 6
AA6
A
134 141Right-handed alpha
Helix 7
AA7
A
150 165Right-handed alpha
Helix 8
AA8
A
182 191Right-handed alpha
Helix 9
AA9
A
205 216Right-handed alpha
Helix 10
AB1
A
228 230Right-handed 310
Helix 11
AB2
A
231 244Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6NKE.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
45 48parallel
Strand 3
A
74 76parallel
Strand 4
A
90 96parallel
Strand 5
A
122 130parallel
Strand 6
A
168 172parallel
Strand 7
A
197 200parallel
Strand 8
A
219 222parallel
Strand 9
A
16 21parallel
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